G5271


Basic Information

Item Value
gene id G5271
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30545287 ~ 30545525 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6458
acctatcaaaagtggtccaaggaaggaaaagcagtgaaccggcaacagggtcatgggcggccaaggctcattgatgcacgtggggagtgaaggctggcccgtgtggtccgatccaacagacaagctactgtagctcaaattgctgaaaaagttcatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcatatggggctgcgtagccgcagacaaGTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6458 True 239 lncRNA 0.52 1 30545287 30545525

Neighbor

gene id symbol gene type direction distance location
AMCG00004028 cmtr1,LOC107682822 coding upstream 275089 30258472 ~ 30270198 (+)
AMCG00004037 NA coding upstream 290152 30254370 ~ 30255135 (+)
AMCG00004030 NA coding upstream 315660 30226633 ~ 30229627 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding upstream 342497 30201188 ~ 30202790 (+)
AMCG00004025 NA coding upstream 377415 30157362 ~ 30167872 (+)
AMCG00004045 NA coding downstream 159615 30705140 ~ 30722327 (+)
AMCG00004050 NA coding downstream 236529 30782054 ~ 30802209 (+)
AMCG00004049 NA coding downstream 259566 30805091 ~ 30807233 (+)
AMCG00004051 bpnt1 coding downstream 297195 30842720 ~ 30849036 (+)
AMCG00004059 NA coding downstream 351551 30897076 ~ 30913151 (+)
G5248 NA non-coding upstream 269005 30275108 ~ 30276282 (+)
G5198 NA non-coding upstream 398730 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 422106 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 436247 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 846063 29697667 ~ 29699224 (+)
G5272 NA non-coding downstream 7452 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 195039 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 232522 30778047 ~ 30778270 (+)
G5417 NA non-coding downstream 447081 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 1240809 31786334 ~ 31786883 (+)
AMCG00004039 NA other upstream 238112 30296867 ~ 30307175 (+)
G5245 NA other upstream 273763 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1003929 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1861306 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1959613 28568184 ~ 28585674 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 342470 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 1854880 32400405 ~ 32402383 (+)
G5642 NA other downstream 2584595 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 4307338 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 5206925 35752450 ~ 35766180 (+)

Expression


Co-expression Network