G5387


Basic Information

Item Value
gene id G5387
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30843678 ~ 30846301 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6597
CACCAACACACCGcactgacacactctctcacCTTCTCTACGATGCCCAGCTCCCCGCTGTGCAGGACCCTTCTGACAATTCCACCCGCTCTCTCTGCCACCGCGAACGCGGACGCCAACACCCGCATCACCACTGGACTGCCTGCCATTTCTGTACCGATACATACCGAGGAACATGCATGTCAGTCACAGTGACACAGGCATGTCAGCGGGTCCGAAGTGCAGACGGGCTGTAAACACACCGACTCCTGCAGCACTGATTTACTGTGATCTGTACAATGCCTGAGCCAGTGCGATTCCCTCCCCAAGAACAAGTCTAATAACAACAGCTCCCACAACAGCAGCTGGCACTGGCAAAACTACAGCTGTGTCTACGGAGGCAGTAATGGTGCCGACCCTCCGCCCCACACACCGGCTCTCCTCATCAGGTCAGGCGCACAATGTGTCGCCAGTTGTCGCTGCTCTCCGGCGCTGTCTGAACATTAGTGCCCAGCTCCGTTTCCCAGCGGACGGACGCACTCACCGCGCTGTTGCGTGCTGCTCCGGGCTGCTCCAGCGCTGCTCTGAGGCGGACTGAGAGGCACCGGAGAGTCGCTGTCAGCGGCCCGCCAGGAAACCGCGCCGGAGGGACGGCCTCTGTCACCGCGCCGGTCCTAGCGCTAGATGGGTTCACACCTCGTAATCCTGCTGCAGCTAATGCAGTGCGTGTTCCTGGTGACTActatggagcattataaggggcaaaattaaatatttaattcataaattaatgcatcaattcataaatcaattcattcatttattgcGCTGTTTGCTAAGTGATCTTTCAGCTAAATTTTGCAATCGAActtcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6597 True 855 lncRNA 0.46 2 30843678 30846301

Neighbor

gene id symbol gene type direction distance location
AMCG00004055 NA coding downstream 15173 30827123 ~ 30828505 (-)
AMCG00004046 NA coding downstream 61912 30779865 ~ 30781766 (-)
AMCG00004048 glo1,LOC107679178,LOC102787485,LOC105030941,LOC103022823,LOC107667967,LOC108426138 coding downstream 105057 30734896 ~ 30738621 (-)
AMCG00004047 LOC107735505 coding downstream 110285 30726581 ~ 30733393 (-)
AMCG00004044 NA coding downstream 204333 30632532 ~ 30639345 (-)
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding upstream 4574 30850875 ~ 30856059 (-)
AMCG00004053 NA coding upstream 13791 30860092 ~ 30882508 (-)
AMCG00004061 slc30a10,ypel5,LOC107601641,LOC107672346,LOC107683860,LOC107568027 coding upstream 86002 30932303 ~ 30937309 (-)
AMCG00004062 NA coding upstream 93855 30940156 ~ 30945990 (-)
AMCG00004063 eprs,LOC107679779,LOC107732550,LOC107662594 coding upstream 104554 30950855 ~ 30955886 (-)
G5333 NA non-coding downstream 30095 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 41103 30800763 ~ 30802575 (-)
G5315 NA non-coding downstream 100511 30742779 ~ 30743167 (-)
G5273 NA non-coding downstream 290460 30552977 ~ 30553218 (-)
G5269 NA non-coding downstream 305241 30537936 ~ 30538437 (-)
G5393 NA non-coding upstream 43885 30890186 ~ 30959114 (-)
G5432 NA non-coding upstream 142571 30988872 ~ 30990100 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 523699 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 540283 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 687646 31533947 ~ 31534379 (-)
AMCG00004041 NA other downstream 567451 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 623543 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1514563 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 3974100 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 4845050 25965420 ~ 25998628 (-)
AMCG00004060 NA other upstream 123378 30969679 ~ 30973496 (-)
G5502 NA other upstream 1463179 32309480 ~ 32309910 (-)
G5540 NA other upstream 1561501 32407802 ~ 32426563 (-)
G5566 NA other upstream 1747326 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2719785 33566086 ~ 33567325 (-)

Expression


Co-expression Network