G5393


Basic Information

Item Value
gene id G5393
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30890186 ~ 30959114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6606
aaaaaaaatgaaaaaaaaaaaaaaaagccagcaaATCTCCCTGAgctttacaaaatacagaatacatgaCACAGGAAACATCCTACTGGTCACAGCGCACAGAGTCCCACAGCCAGAGTCAGAGAACCACTAGAGTACAATTAAAACGACAAAaccaaatgtacaaaaaaaagaatgtacaaTGGATGCAGAAGAGCATGCATGCAGGCAGACCAACAGACAGACTTGTCCACTGAACACATCTCTCGAGGACATATggggaggaaaataaatcatttaaattccACTTCAGCACCAGTCTTTTCTTACACATTCCTTTCAAGACAACACTTAGCCACCTTGGGCCGGTGGGCCACATtagagtccagtccagtgcccTGTGGTTTGAGTTTTAGTCAAGCTCTTAATTactgaagcatttattttcatgatgtGGACTAAGACTGCTAAAGGTTATTCTGGGTCAGGACTTTAACCATTTAATCCATGTGGATAAGAAGAGAGCAGGTAGGGTGTTAAAAAGACATGCAGAACTGAGACTCACCTAGACCAGCACTGCCCATCACCTCTCTAACACACAGCACCAGGCCTAGAGGGCTGTAGTGTCCTCCTGTATCTTATGCACCCCAACCTGTACTGCAGTCCTGAGCAGAAACAGGCACACAGTGCTCCAGCTCCCATCAGATGAGTGGCTTCAGTACAGAACAGTGCTCCCCACTTCAGCACCCCCTTATCAGAGGCCTTGAGAATCCAGACCTGCTTTTCCCATTTTAAATCGCATGTGAACCCCTCCTGCGGAGAAACCACTCCACCCCGACAGTAACCCCTAGACCCCTCCTGACTGAAGGCAGTAGCTGTCATAGACCCGTGGCCCTGTTCCAATGCTCACCCAGTCCGTACCATTTATGGACAGCACAAAGTTTTGTTTGCTGGTTtctaacatacatatatacatacatacatacacatataactCCAAACCACTTCCTTTTCTGAGTGGTGATgaatgggggagggggacagAAGAGAAGTGCAATGAGTCAGTCCATCGCACATCATCTCGGACAGCACTAATATGACCCAGTACCCTAGAGAGAGACGCAGACACTGGGAGGACCTCAGTGTTTAGGTGTCTACAGTCTGCCTGTAACAGCACCGGAGCAGCAGTGTCAGGGCCCAGTCATGTTGGCCATCTAATCCAGCATCACACAAGGATAAAGGGGGCAGGCATCAATCCACAGTCCTGCAGAGCTCCCGTCTCTCCTACTCCAGATACCTGCCCACGGAATATGATTTGGAACCATTTGTCCTGCCCCTTGTTAGAGGGCGGGTGTGTGGGTTGTGATTAGCACTGTCACCGTTCTTGGGCAAGGTCTCTCCAAACAGAGGGATCTGCCATTACACAGTCCTGCATTGGAGAGAAGACTTCTCCAGGTTCGCTCAACTTTTCCTGTGTGACAGGTGGCAAGCTGCCTGACAACAATCTTGTTCTGGGGGAAGGTGCTTAACAAACCTGTACATTGATGCATGGACTTCCTCTAGATTTCTAATCCTCCCCCCACacacacacacacacacg

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU6606 True 1579 lncRNA 0.47 3 30890186 30959114

Neighbor

gene id symbol gene type direction distance location
AMCG00004053 NA coding downstream 7678 30860092 ~ 30882508 (-)
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding downstream 34127 30850875 ~ 30856059 (-)
AMCG00004055 NA coding downstream 61681 30827123 ~ 30828505 (-)
AMCG00004046 NA coding downstream 108420 30779865 ~ 30781766 (-)
AMCG00004048 glo1,LOC107679178,LOC102787485,LOC105030941,LOC103022823,LOC107667967,LOC108426138 coding downstream 151565 30734896 ~ 30738621 (-)
AMCG00004068 NA coding upstream 54031 31013145 ~ 31022165 (-)
AMCG00004069 NA coding upstream 108197 31067311 ~ 31075673 (-)
AMCG00004070 NA coding upstream 117799 31076913 ~ 31091307 (-)
AMCG00004072 NA coding upstream 360481 31319595 ~ 31320594 (-)
AMCG00004074 NA coding upstream 578794 31537908 ~ 31539407 (-)
G5387 NA non-coding downstream 43885 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 76603 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 87611 30800763 ~ 30802575 (-)
G5315 NA non-coding downstream 147019 30742779 ~ 30743167 (-)
G5273 NA non-coding downstream 336968 30552977 ~ 30553218 (-)
G5432 NA non-coding upstream 29758 30988872 ~ 30990100 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 410886 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 427470 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 574833 31533947 ~ 31534379 (-)
G5476 NA non-coding upstream 712249 31671363 ~ 31671579 (-)
AMCG00004041 NA other downstream 613959 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 670051 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1561071 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 4020608 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 4891558 25965420 ~ 25998628 (-)
AMCG00004060 NA other upstream 10565 30969679 ~ 30973496 (-)
G5502 NA other upstream 1350366 32309480 ~ 32309910 (-)
G5540 NA other upstream 1448688 32407802 ~ 32426563 (-)
G5566 NA other upstream 1634513 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2606972 33566086 ~ 33567325 (-)

Expression


Co-expression Network