G5476


Basic Information

Item Value
gene id G5476
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31671363 ~ 31671579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6709
tctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgctttttctaatctatattaatgatctggactctgggatagttagcaaacttgtcaattttgcagatgatactaaaataggtggctcagcaaaTACAATCTCGgtagcacaggctattcaaagggacttggataatattcagttgtggaccAACACCTGGC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU6709 True 217 lncRNA 0.42 1 31671363 31671579

Neighbor

gene id symbol gene type direction distance location
AMCG00004073 lrfn2,LOC106597048,LOC106582474 coding downstream 103348 31558683 ~ 31568015 (-)
AMCG00004074 NA coding downstream 131956 31537908 ~ 31539407 (-)
AMCG00004072 NA coding downstream 350769 31319595 ~ 31320594 (-)
AMCG00004070 NA coding downstream 580056 31076913 ~ 31091307 (-)
AMCG00004069 NA coding downstream 595690 31067311 ~ 31075673 (-)
AMCG00004077 supt7l,LOC107656753,LOC107726086,LOC107553729,LOC107737450,LOC107697525 coding upstream 659747 32331326 ~ 32333781 (-)
AMCG00004076 NA coding upstream 678374 32349953 ~ 32363126 (-)
AMCG00004091 daam2 coding upstream 941517 32613096 ~ 32650701 (-)
AMCG00004090 daam2 coding upstream 992085 32663664 ~ 32671871 (-)
AMCG00004094 NA coding upstream 1291461 32963040 ~ 32974811 (-)
G5467 NA non-coding downstream 136984 31533947 ~ 31534379 (-)
G5465 NA non-coding downstream 284330 31386584 ~ 31387033 (-)
G5463 LOC108443926,LOC105894840 non-coding downstream 299954 31370000 ~ 31371409 (-)
G5432 NA non-coding downstream 681263 30988872 ~ 30990100 (-)
G5393 NA non-coding downstream 712249 30890186 ~ 30959114 (-)
G5483 NA non-coding upstream 114755 31786334 ~ 31786944 (-)
G5491 NA non-coding upstream 357374 32028953 ~ 32029406 (-)
G5494 NA non-coding upstream 519741 32191320 ~ 32191542 (-)
G5500 NA non-coding upstream 597126 32268705 ~ 32269226 (-)
G5528 NA non-coding upstream 711830 32383409 ~ 32383683 (-)
AMCG00004060 NA other downstream 697867 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 776539 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 1395136 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 1451228 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 2342248 29324741 ~ 29329115 (-)
G5502 NA other upstream 637901 32309480 ~ 32309910 (-)
G5540 NA other upstream 736223 32407802 ~ 32426563 (-)
G5566 NA other upstream 922048 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 1894507 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 2203862 33875441 ~ 33918321 (-)

Expression


Co-expression Network