G5482


Basic Information

Item Value
gene id G5482
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31786334 ~ 31786883 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6715
catagttacttgaagacaaagtgtttgaggaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatttaaatgactgaacactttcgtattcagtcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcatgcgcagtctgtaaagttctttatttaataaagtcctttaaaagaattcttcgtacggcttgtacttctcccagtttaactcttcttggttggtttctggttccggttcaggcaacagagctacaggttgagctgtggcagcgagtttctggttcaggtgagagagagagagtgaaagaccgtgcgctgttctttatacgcctgtcagatcaataggtgattggttcttgagtttttgagattggatttcggtttcagcccccagtgtcctattggaggggggcttgatttatgactgatgtcaatccatgccatcttttggaaatgccggttggcccgggttcgtagctctgtgtctggatttcggctctcgtccat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6715 True 550 lncRNA 0.37 1 31786334 31786883

Neighbor

gene id symbol gene type direction distance location
AMCG00004071 LOC105894840,LOC108443926 coding upstream 415176 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 723625 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 746597 31030418 ~ 31039737 (+)
AMCG00004065 NA coding upstream 796234 30974976 ~ 30990100 (+)
AMCG00004057 NA coding upstream 817130 30961633 ~ 30969204 (+)
AMCG00004078 NA coding downstream 518608 32305491 ~ 32329172 (+)
AMCG00004075 NA coding downstream 548509 32335392 ~ 32346595 (+)
AMCG00004080 bre coding downstream 641576 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 662524 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 712590 32499473 ~ 32529839 (+)
G5417 NA non-coding upstream 793434 30992606 ~ 30992900 (+)
G5297 NA non-coding upstream 1008064 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 1045461 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 1233120 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 1240809 30545287 ~ 30545525 (+)
G5490 NA non-coding downstream 242121 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 404437 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 481865 32268748 ~ 32269071 (+)
G5501 NA non-coding downstream 522622 32309505 ~ 32309912 (+)
G5522 NA non-coding downstream 561507 32348390 ~ 32350103 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 891507 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 1479159 30296867 ~ 30307175 (+)
G5245 NA other upstream 1514810 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2244976 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 3102353 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 613522 32400405 ~ 32402383 (+)
G5642 NA other downstream 1343237 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3065980 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3965567 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 4240396 36027279 ~ 36045282 (+)

Expression


Co-expression Network