G5500


Basic Information

Item Value
gene id G5500
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32268705 ~ 32269226 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6734
cagacaccaattccaaagatatacattgtcaaatttattcaaaaacaaagactaaatgtagcactacactaattatacaaaaggggaaaactaattaaaattcaactagatcaacaaatcaaagacaaagacttccgtgaccaaatcaaagaccatgggatcgcatatgatatcacacaaatcgttaaacaaaaaaggttataaacacattgactacaataccagttagtaagacgaaggtgagtctctcattagtattgttagtcggacattaaataactacgcaggttagtatttatgtcaggtaacttctcgttatatatatatcagtctcatttacgtttaggtgccgagaaagatcatatcattacttgttaccacaatttctcttaactgattattattcaatgattaaggataggcagggccaccaataatctaatgtctattaacgtgtgtcaatttcagactaaacagttaaacaggaatcaGAAGATAGTTCTCAgcattgacagattttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6734 True 522 lncRNA 0.52 1 32268705 32269226

Neighbor

gene id symbol gene type direction distance location
AMCG00004073 lrfn2,LOC106597048,LOC106582474 coding downstream 700690 31558683 ~ 31568015 (-)
AMCG00004074 NA coding downstream 729298 31537908 ~ 31539407 (-)
AMCG00004072 NA coding downstream 948111 31319595 ~ 31320594 (-)
AMCG00004070 NA coding downstream 1177398 31076913 ~ 31091307 (-)
AMCG00004069 NA coding downstream 1193032 31067311 ~ 31075673 (-)
AMCG00004077 supt7l,LOC107656753,LOC107726086,LOC107553729,LOC107737450,LOC107697525 coding upstream 62100 32331326 ~ 32333781 (-)
AMCG00004076 NA coding upstream 80727 32349953 ~ 32363126 (-)
AMCG00004091 daam2 coding upstream 343870 32613096 ~ 32650701 (-)
AMCG00004090 daam2 coding upstream 394438 32663664 ~ 32671871 (-)
AMCG00004094 NA coding upstream 693814 32963040 ~ 32974811 (-)
G5494 NA non-coding downstream 77163 32191320 ~ 32191542 (-)
G5491 NA non-coding downstream 239299 32028953 ~ 32029406 (-)
G5483 NA non-coding downstream 481761 31786334 ~ 31786944 (-)
G5476 NA non-coding downstream 597126 31671363 ~ 31671579 (-)
G5467 NA non-coding downstream 734326 31533947 ~ 31534379 (-)
G5528 NA non-coding upstream 114183 32383409 ~ 32383683 (-)
G5536 NA non-coding upstream 118520 32387746 ~ 32388969 (-)
G5539 NA non-coding upstream 122657 32391883 ~ 32392110 (-)
G5552 NA non-coding upstream 258457 32527683 ~ 32529838 (-)
G5555 NA non-coding upstream 276151 32545377 ~ 32547006 (-)
AMCG00004060 NA other downstream 1295209 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 1373881 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 1992478 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 2048570 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 2939590 29324741 ~ 29329115 (-)
G5502 NA other upstream 40254 32309480 ~ 32309910 (-)
G5540 NA other upstream 138576 32407802 ~ 32426563 (-)
G5566 NA other upstream 324401 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 1296860 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 1606215 33875441 ~ 33918321 (-)

Expression


Co-expression Network