G5501


Basic Information

Item Value
gene id G5501
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32309505 ~ 32309912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6735
cactcaaggacattcacagagttgtcctgtagccactcctttgttatcttggctgtgtgcttagggtcgttgtcctgttggaagatgaaccttcgccccagtctgaggtccagagtgctctgcagcaggttttcatcaaggatgtctctgtacattgctgcattaatctttccctcgatcctgactagtctcccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgacgcttgccattcaggccaaagagttcaatctttgtttctcatggtctgagagtccttcagatgccttttggcaaactccaggcgggctgtcatgtgcctttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6735 True 408 lncRNA 0.51 1 32309505 32309912

Neighbor

gene id symbol gene type direction distance location
AMCG00004071 LOC105894840,LOC108443926 coding upstream 938347 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 1246796 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 1269768 31030418 ~ 31039737 (+)
AMCG00004065 NA coding upstream 1319405 30974976 ~ 30990100 (+)
AMCG00004057 NA coding upstream 1340301 30961633 ~ 30969204 (+)
AMCG00004075 NA coding downstream 25480 32335392 ~ 32346595 (+)
AMCG00004080 bre coding downstream 118547 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 139495 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 189561 32499473 ~ 32529839 (+)
AMCG00004082 NA coding downstream 249067 32558979 ~ 32559365 (+)
G5499 NA non-coding upstream 40434 32268748 ~ 32269071 (+)
G5493 NA non-coding upstream 117963 32191320 ~ 32191542 (+)
G5490 NA non-coding upstream 280204 32029004 ~ 32029301 (+)
G5482 NA non-coding upstream 522622 31786334 ~ 31786883 (+)
G5417 NA non-coding upstream 1316605 30992606 ~ 30992900 (+)
G5522 NA non-coding downstream 38478 32348390 ~ 32350103 (+)
G5527 NA non-coding downstream 73497 32383409 ~ 32383679 (+)
G5529 NA non-coding downstream 74523 32384435 ~ 32387535 (+)
G5569 NA non-coding downstream 301921 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 1128416 33438328 ~ 33445420 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1414678 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2002330 30296867 ~ 30307175 (+)
G5245 NA other upstream 2037981 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2768147 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 3625524 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 90493 32400405 ~ 32402383 (+)
G5642 NA other downstream 820208 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2542951 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3442538 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3717367 36027279 ~ 36045282 (+)

Expression


Co-expression Network