G5522


Basic Information

Item Value
gene id G5522
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32348390 ~ 32350103 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6760
ATGTGATCACAAGTCATATATTTTCAAGGATGGAATGCAAGCGACACAAAAAGAATGTCACTGAAGAAAAAGCCTTCTTGCTAGTAGTACAATGTAGTTGCAAACGTACTCTGCTACAGTTACCTTGCAACATGTAAGGTATGTGATTTTAGTACATTTGCATTGTCGGTAAAAGGATACATTCAATGTGCAtaaataccttttttaaatggaaaagcgTTTTTCATGTGCTTCTCGTTAACTCAGAACTTTccatttttacattcatttccCGAAGCAGAACTCAAGTGTGTGCAGAGGTCAAGGCATGAAGGtgcttcattgttttttttttcttttttgttagtttgattatttttcaggttttcctttttgtgcATGTATaggggagggagaagagcaTGTAGAAGGAAGAAACTGCAAGAGCCCACAGGGAAGTAAGTTGCTATGAGGCTGGGTTTTTAAAAGTAAAGTTCATAATTTGCCAAGTCATGACATATGTTTGGAATAAGAAGCTATCTCTACTTTGTTGCCTTCAGTCTGTTTTACCTTAGAACATCCCCAGTGCTTGAAAACAGCAACAGTGCACACCTTTCACATATATAATTGTGCATGGTAATCTTAAAAATGTAGGGGATTGCTATTGAAcaaagaacatttatttatatctagAGATCTAGATCATTTTAAATGAGAGAATTCCAAATTGAGATGAACAAACCTGCATGCATGATTATGCTCCGATTTAAAACACGACAAAAGGGGTAATTCTCTTAACATATTTTATGTTCATCCGGCTTGTTTAAGCTCTAAACTGGAtggtattatattttatatgagaCAAAGAAACTGccttatgaaaatgttttaaaagcaggtaTGTAAACCCAAAATGCCCATGGAAAACTGGAGGCTCCAACAATTGTCTTCCTCACTCAAACACTCCTTCGCCCTATTAAAGGCCAGCAGTGAGATTTTAGACTGATGGAAAAGAGCTGAGAAACAAAGCAGGCCAACAGATAATAATTAGAACAAAAATCTGGAATATCACAGGCCACAAACTGAGGACAGTACTGTCTGAGCCCTGAGGCCTACCAAAGTGACAATAAAAACCCCACGTTCCCAGGAAGGAAAGCTAGTTCCTGATAatgatttTCTTGATCAGACCCTGAAGAATCAAAACCATCGGGTTCTTGTTGGTTTCCTCTGTTGTCCTGTACCTGATACCAGTCTGTTTACTGCTTCTCTTTTTTATAATTAGATTCCTGAGTGAGAGAGTGTCCAGAGATACTTTTTTATGTCTTCAAGCTTCTTGCAGCCCGcttcattaataatataaagggcacaattaaattaataactaaCAATATCAATAAACTATTGTTTCTCATTAATTTGGTTGGGGTTCTGAAAATTGATGAGGGGCCCTGTACGAGAAAACCAACAGCTTTTCTTTCCAGCAGTGCCACAGTTCTTGGATTTCCCTCGGTCCTCTCCGGTGTCTGAACGTGGATGTTAGAGGGTTGGGGTGGTCTTCCTCAGGCACATGGCGGCTCCTCGGGGGGCGTCAGAGGGCTGCAGGGGGGGGCAGTGCTCAGCGAACGGAATGCGAAGATGGAGGGATCGTAGGCGTACCGGGGAGGGGGGCGGCTGCCGCTCAGACTCTAAAAGGAAACAAGAAGGTTTTGA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase NEURL1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6760 True 1689 lncRNA 0.40 2 32348390 32350103

Neighbor

gene id symbol gene type direction distance location
AMCG00004075 NA coding upstream 1795 32335392 ~ 32346595 (+)
AMCG00004078 NA coding upstream 19218 32305491 ~ 32329172 (+)
AMCG00004071 LOC105894840,LOC108443926 coding upstream 977232 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 1285681 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 1308653 31030418 ~ 31039737 (+)
AMCG00004080 bre coding downstream 78356 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 99304 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 149370 32499473 ~ 32529839 (+)
AMCG00004082 NA coding downstream 208876 32558979 ~ 32559365 (+)
AMCG00004086 NA coding downstream 221476 32571579 ~ 32582699 (+)
G5501 NA non-coding upstream 38478 32309505 ~ 32309912 (+)
G5499 NA non-coding upstream 79319 32268748 ~ 32269071 (+)
G5493 NA non-coding upstream 156848 32191320 ~ 32191542 (+)
G5490 NA non-coding upstream 319089 32029004 ~ 32029301 (+)
G5482 NA non-coding upstream 561507 31786334 ~ 31786883 (+)
G5527 NA non-coding downstream 33306 32383409 ~ 32383679 (+)
G5529 NA non-coding downstream 34332 32384435 ~ 32387535 (+)
G5569 NA non-coding downstream 261730 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 1088225 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 1122933 33473036 ~ 33473330 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1453563 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2041215 30296867 ~ 30307175 (+)
G5245 NA other upstream 2076866 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2807032 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 3664409 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 50302 32400405 ~ 32402383 (+)
G5642 NA other downstream 780017 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2502760 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3402347 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3677176 36027279 ~ 36045282 (+)

Expression


Co-expression Network