G5529


Basic Information

Item Value
gene id G5529
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32384435 ~ 32387535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6773
CGGAAGTGTTGCAGCGCCGGGCTCGTGTGCGTCAATGTGACACTGAAGCCTCgtctttcaaaatgttcctCACAGCCGCGAATTTGGCCAAGGCCAAATCCAAGACAGTCCTGGTTCAGATGCTGAGTGCTGCTGGGACCGGGTTCAGTTTCAATACCAAGAGGAACCGGCTGCGTGAGAAACTAGTGTTGCGTAAACACGACCCCATAGTGAACAAGCACGTCCTTTTCTTTGAGAAGAAGAAGATTCGATCCATTTAAAGATTGGTGGAAAAAGGAAACGGCTGTCTAGGTGGACTTGACTCAATCCAGCATGGATCTAGACAAAAGACATTCAGATATTTATATCCAGAGAGGCTAACTGGTGATCGTTGCTCTTTTCACTCCCATCTACTGCAGTGTGCCCCCAGTTAATCGAAGAAGTGAAGAGTTTTCTTTGAAATGGGGACATAAATTTGTGGATAGCAGACCAGTTATCGATGAAGAGAATGCAAGACTGGGGTGGGATATGTGAAGGGGAGGGGGGTccttgcaaaataaatgatctgGACAATGCACGTGTCATTTCAGGATCAATATGAATCTAGTTTATTTACATCCAGCACTCTGATCCAAAATCCAGAAATTAAATTACTGCGGGAATTTCCGAAATTGCTCATATCCCTACTTGCATAAGAAAAgtaatgtttgttgtttttttatgctcGTATCCATTGGTGATTTTGTACACATTCACCCACATCAGCATCTGTAACCTCATGTAGTGAAAAGTCATTTTCCCAAAAAggacaaagagaaaaataacaatagtcTTTCTTAAGatgttattttgaaacaatttcTGTTAGTGTATATTGACATAAGCCAAGGTGATGAAATGGTGTAATTAATCATTCCCTTGTTTCAGTAGTTAAAGTTCTGTTACACACATTGTTGATTACACAGTTGTGTGCAATCTCAAATCTGTCATTAATTCAGGTATCTTGGGGTAGAACAAACATTGTGATAGTAGCAAATAAACATCAAGTTGGTTTCATTAGGGCtggagtgtgtcagtgtgtaataaatattataatttagaCTGGGGGTGTGTTGATTTTGCTCTGCCCCCCTAAAGAACTTTTACTGTGGCAGtcaaatgtttatatgtatttgttcaagGGGAtccttaaattattattattgtttgtttcatagGAGTCAGAAATCATACTAACATGGTAGTGTGTAAACCATCCTGTTAAATATAATGATTCCCTCACTGAGGAACAGCTAGTGCGATAAGAGCCCCAGTGCAGACGGACCGTGGGAGGTTGAGACTGATGTTCAACGTCCTGCATTTGCCCCCTtcgttaagaacataagaaagtttgcaaacaagaggaggccatttgaccatCGTGTTCGTTTGGTCTCCTGCCATGACCCGGATTCGAACCAGGGTTGTTGTGGCCACAACACAAAGTACTAACCACTATACTATCACAGCAAACTACCAGGGAGATTATAGTGACTAACTGCTGTGAAACTATTTCCTGATGTTTGGATTGCAAAAATGCCAGTATtgatgacaaaacagaagtctgATGATGAAATGTATGTTAcgatataaatatgtaatttcaaTAATACACCCCTACTGGTCCTGTCCAC

Function

GO:

id name namespace
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU6773 True 1652 lncRNA 0.41 4 32384435 32387535

Neighbor

gene id symbol gene type direction distance location
AMCG00004075 NA coding upstream 37840 32335392 ~ 32346595 (+)
AMCG00004078 NA coding upstream 55263 32305491 ~ 32329172 (+)
AMCG00004071 LOC105894840,LOC108443926 coding upstream 1013277 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 1321726 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 1344698 31030418 ~ 31039737 (+)
AMCG00004080 bre coding downstream 40924 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 61872 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 111938 32499473 ~ 32529839 (+)
AMCG00004082 NA coding downstream 171444 32558979 ~ 32559365 (+)
AMCG00004086 NA coding downstream 184044 32571579 ~ 32582699 (+)
G5527 NA non-coding upstream 756 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 34332 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 74523 32309505 ~ 32309912 (+)
G5499 NA non-coding upstream 115364 32268748 ~ 32269071 (+)
G5493 NA non-coding upstream 192893 32191320 ~ 32191542 (+)
G5569 NA non-coding downstream 224298 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 1050793 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 1085501 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 1087307 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 1178638 33566173 ~ 33567479 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1489608 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2077260 30296867 ~ 30307175 (+)
G5245 NA other upstream 2112911 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2843077 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 3700454 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 12870 32400405 ~ 32402383 (+)
G5642 NA other downstream 742585 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2465328 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3364915 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3639744 36027279 ~ 36045282 (+)

Expression


Co-expression Network