G5536


Basic Information

Item Value
gene id G5536
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32387746 ~ 32388969 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6781
TCTGCCTGTATcttgagttttttgttttgtttttggatttatCCAACTCAAAGGTTGTTAAAGAGGTATCTATAAGGGTTAAACGGACAGACTTGGCTGTTCTATAGGTCCTCTTGAGTCTCAGTGTCTGCAGCTTGTGTGGAGAATTGATGGTTTTATGCccagtttcatgcattttaataatgtatttgtttttgtatgggGGGTGTGTTACAGGGAGCAGGAGACAGCTTCATCGGAGCCTTGGCCTTTTACATGGCACATTATCCCACAGTGCCTCTGGAGGAAATGGCCAGGAGAGCCAATCTGGTTGCAGCAGTGAGCGTGCAGAGCACAGGCACTCAGACGTCTTACCCCTTCAGAAAGGACCTGCCTGCAGAGCTCTTCTAGacctgagacacacacatatatggtGGGCACTCCTTGACTTCGACCATGTTTAGTTTCCATTCATCCATAACTCAACACAGACCGTAACAGAGATGAATCCTGATCACACACACCCCTATGTCTATATACAGCAACCCATGAGCACCACCAAActttaatacagacacacaaacttgTAAATATTCTTACTGTCATACATCATGCATCATCAATGGTAATTCATCCACAAGATAATCACAATCCCCATACTGTACTGCAAACCTCTTCTCTTCCCTCGCTCCTTAATTAATCCATGAGGGGGTTTTTCCAAGAaagctgtgtttgtgtaaaacaaGATTAATCGTTTCTCAAGTAACTGTAACTGTGTGCTGGTTAATAACAGTGCAAGCCATTTCTTTTCAAACACCAATGTCTTACAAAACCTACCTGGATATTACCACCTCACTTTTACAAAGGGAATTAGAGAGCTGCTGTGTTGATGTAAGGCAGGAGTGACTGTTCCTTTTGTCAACACCCTGCTGGGTGTTAAACCCACACATATAACACAGTCTGTCATCCTCACAGGTGTATGAAAGCACTGGGACAAAGCAACATGTTATTAGTCTTTTCTGCAGTACACATTGAGTACTTAActaaaattgggggaaaaagaggGCAAGGCAAGGGGAAAGAACTAAGTAATAAGTTAGTATGTTCAAGAAGAATGCCTATCAACGGAAGATTATATAAAAGGATTTTGTTATTAAACGGTAATTAATTCAAGTGGGCAGAGagcaatgtgtttaaataaagacCGTGacattgcatttgtttctgtttgaagAGTTATGAACT

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU6781 True 1224 lncRNA 0.36 1 32387746 32388969

Neighbor

gene id symbol gene type direction distance location
AMCG00004076 NA coding downstream 24620 32349953 ~ 32363126 (-)
AMCG00004077 supt7l,LOC107656753,LOC107726086,LOC107553729,LOC107737450,LOC107697525 coding downstream 53965 32331326 ~ 32333781 (-)
AMCG00004073 lrfn2,LOC106597048,LOC106582474 coding downstream 819731 31558683 ~ 31568015 (-)
AMCG00004074 NA coding downstream 848339 31537908 ~ 31539407 (-)
AMCG00004072 NA coding downstream 1067152 31319595 ~ 31320594 (-)
AMCG00004091 daam2 coding upstream 224127 32613096 ~ 32650701 (-)
AMCG00004090 daam2 coding upstream 274695 32663664 ~ 32671871 (-)
AMCG00004094 NA coding upstream 574071 32963040 ~ 32974811 (-)
AMCG00004095 NA coding upstream 593494 32982463 ~ 32985504 (-)
AMCG00004096 syt14,syt14a,LOC101484328,LOC107548616 coding upstream 625559 33014528 ~ 33022148 (-)
G5528 NA non-coding downstream 4063 32383409 ~ 32383683 (-)
G5500 NA non-coding downstream 118520 32268705 ~ 32269226 (-)
G5494 NA non-coding downstream 196204 32191320 ~ 32191542 (-)
G5491 NA non-coding downstream 358340 32028953 ~ 32029406 (-)
G5483 NA non-coding downstream 600802 31786334 ~ 31786944 (-)
G5539 NA non-coding upstream 2914 32391883 ~ 32392110 (-)
G5552 NA non-coding upstream 138714 32527683 ~ 32529838 (-)
G5555 NA non-coding upstream 156408 32545377 ~ 32547006 (-)
G5570 NA non-coding upstream 215919 32604888 ~ 32611344 (-)
G5645 NA non-coding upstream 715756 33104725 ~ 33105215 (-)
G5502 NA other downstream 77836 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 1414250 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 1492922 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 2111519 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 2167611 30184618 ~ 30220135 (-)
G5540 NA other upstream 18833 32407802 ~ 32426563 (-)
G5566 NA other upstream 204658 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 1177117 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 1486472 33875441 ~ 33918321 (-)
AMCG00004120 NA other upstream 1626399 34015368 ~ 34031547 (-)

Expression


Co-expression Network