G5555


Basic Information

Item Value
gene id G5555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32545377 ~ 32547006 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6804
GGATACTTACTTACCATGGAGGATCCGGCCGTGCAGAAGTCGAGACGTTTAGCGGACTACCTccttactttgttttatttcacttaatACAAATCGCAAATATACCACTAGTTACCAGAGGTGTTCagttcacatttttttctttgtaccaTCCCAGTAAAATACAAAGAAGCAACATTTTCATACCGGTTGGGTCGGGGACTCGTTATCCGCACGGAAAGGAATGTGGTTAGTAAAGCTGCGGAGAAGCGCCTGCGCTGAGCCGCCAGGGACACAGCAGACAGGTGGTCTCCGCTCCGCCTGGCTGAGTGAGACCCTCGCAGATATAGTTACCTGGTAGCTGGAGGTAGAGATCGGGCTGCCGATGGTGCTGCTGCCGCTTGTGAAGGACTCTGGCTGAGCCGGCGAAGCGCTGCTACCACGGGAGGACGTGTCGTAGTTCCCGGGGTAGTCCTGGTACATGATCCGGGATAAGAAGAGCAGGGCTCGGGAAGGGATGCGAGCTCCGTCGGGCTCCGGGTGTCCACGTTTGTCTGCTCAGTACTCCCAAACGGCACGATACAGAAAAGCGCAATCCCAAGTCGCAGACACTTCAATCGtcgagaaaaaaaaaggaataaatcaGGCAATACCCCAGAATGCCAACAGCGGCTGCTCACTTTCTGGCCTGTCTTCTCCCCAATAAAAGTCCCCAAAAGTTgacaattgtttttcttttcttttatgatCAAAAATAGATTTGagataataaaacagacagctacaaataataaaacaggctAGTTTTCCTCCGAGAGCGGTTCTTTATTGCGTTGCCATTGACTCATCCATTGGCTGGGGTGGTGAGAGCGCAGTCGCCGCGTCTCTGAACTGCCCGCACCAGCGCGCAGCCGCTCTGACAGTGACTCACTCCGGCCGGCGTTTTGTGTTCTATACTTTAAATAAGAAGCTGTTGCGACACCTTctgcttctttctcttttttcccttGTCTCTATCCCGCTGGAACAGTTCAGcctcctttttttccccctgttgaATATTTTGCCGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6804 True 1051 lncRNA 0.41 2 32545377 32547006

Neighbor

gene id symbol gene type direction distance location
AMCG00004076 NA coding downstream 182251 32349953 ~ 32363126 (-)
AMCG00004077 supt7l,LOC107656753,LOC107726086,LOC107553729,LOC107737450,LOC107697525 coding downstream 211596 32331326 ~ 32333781 (-)
AMCG00004073 lrfn2,LOC106597048,LOC106582474 coding downstream 977362 31558683 ~ 31568015 (-)
AMCG00004074 NA coding downstream 1005970 31537908 ~ 31539407 (-)
AMCG00004072 NA coding downstream 1224783 31319595 ~ 31320594 (-)
AMCG00004091 daam2 coding upstream 66090 32613096 ~ 32650701 (-)
AMCG00004090 daam2 coding upstream 116658 32663664 ~ 32671871 (-)
AMCG00004094 NA coding upstream 416034 32963040 ~ 32974811 (-)
AMCG00004095 NA coding upstream 435457 32982463 ~ 32985504 (-)
AMCG00004096 syt14,syt14a,LOC101484328,LOC107548616 coding upstream 467522 33014528 ~ 33022148 (-)
G5552 NA non-coding downstream 15539 32527683 ~ 32529838 (-)
G5539 NA non-coding downstream 153267 32391883 ~ 32392110 (-)
G5536 NA non-coding downstream 156408 32387746 ~ 32388969 (-)
G5528 NA non-coding downstream 161694 32383409 ~ 32383683 (-)
G5500 NA non-coding downstream 276151 32268705 ~ 32269226 (-)
G5570 NA non-coding upstream 57882 32604888 ~ 32611344 (-)
G5645 NA non-coding upstream 557719 33104725 ~ 33105215 (-)
G5721 NA non-coding upstream 1079303 33626309 ~ 33627507 (-)
G5805 NA non-coding upstream 1745263 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 2325607 34872613 ~ 34897907 (-)
G5540 NA other downstream 118814 32407802 ~ 32426563 (-)
G5502 NA other downstream 235467 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 1571881 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 1650553 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 2269150 30273806 ~ 30276227 (-)
G5566 NA other upstream 46621 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 1019080 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 1328435 33875441 ~ 33918321 (-)
AMCG00004120 NA other upstream 1468362 34015368 ~ 34031547 (-)
G5801 NA other upstream 1585092 34132098 ~ 34135600 (-)

Expression


Co-expression Network