G5642


Basic Information

Item Value
gene id G5642
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33130120 ~ 33131186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6919
GCTGCATAAATGGGTCATCCGAGTCTCTATTCTGGGCTGCAGTCTCAgttctctcttcctccttctccacACTGGCCTGGAAGTTGGTCTCCAGACTGAAGAGAGACTCATGCTCCCGATCTGTGAACTCTTCCCAAGTCTCTATTTTGTCACCATCTTTCTCTTCACCCTCTTCTATCCCATGATCCTTCTCCAAATCCTGCTGCTTCTGCCGTGGCTGCTCTTCTGCTTCCGGGTGAcctccttcttcctcttcctcactcCCAGAGTCACTTTTTCCTCcttcttcGTCATCCTCAgtctctccttcttctgcttcttcaaTCTCACCCTcactctcctcttcctcttcctcactctcctccacctcctggGCAGCTGTACTCAATGTTGACAGGAGTTTCTGGTAGGCGGACTCCTGCTCTGGCTCACTCTGTACATCACTATCCACATCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6919 True 456 TUCP 0.35 3 33130120 33131186

Neighbor

gene id symbol gene type direction distance location
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding upstream 183204 32937405 ~ 32946916 (+)
AMCG00004093 NA coding upstream 229450 32876810 ~ 32900670 (+)
AMCG00004088 NA coding upstream 285470 32838964 ~ 32844650 (+)
AMCG00004089 NA coding upstream 293439 32814743 ~ 32836681 (+)
AMCG00004087 kif6 coding upstream 355308 32728660 ~ 32774812 (+)
AMCG00004099 NA coding downstream 1169 33132355 ~ 33135491 (+)
AMCG00004101 NA coding downstream 6450 33137636 ~ 33142538 (+)
AMCG00004100 osr1 coding downstream 109846 33241032 ~ 33247564 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding downstream 304564 33435750 ~ 33452672 (+)
AMCG00004109 NA coding downstream 429838 33561024 ~ 33565863 (+)
G5569 NA non-coding upstream 518069 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 742585 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 746441 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 780017 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 820208 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 307142 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 341850 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 343656 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 434987 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 466706 33597892 ~ 33600011 (+)
AMCG00004079 NA other upstream 727737 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2235293 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2822945 30296867 ~ 30307175 (+)
G5245 NA other upstream 2858596 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 3588762 29527414 ~ 29541358 (+)
AMCG00004138 fkbp1b other downstream 1721677 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2621264 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2896093 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3130602 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3556444 36687630 ~ 36697885 (+)

Expression


Co-expression Network