G5662


Basic Information

Item Value
gene id G5662
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33438328 ~ 33445420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6947
CAATGTAAAGCAGGGAAGAAGAAATTATAACTAATTAGTAGGTGCCCTTCAGAGCAAAATCCTGGGCTGCTTGGTTCCACAGGGCCGATGGTAACTTGTGTGCCTTTCCTTTTACCCTTGATTGATGTCCACTTGAAATGCTGTACTGTTCACATGTCGTGTATGTGGTTTACATCAGAAAGGCATATtgcacacaaatgtatacatcagCTGTATTCATGGTTTATAatattaaagtgttaaaatgtttaataccaGTACAAGTAGTGGTTACTTTACTAATGTACTATGGAGAATTTGACCAGAGGTGTTGGACTGATGTATTGTTTACCTTTCAATTCATATGACTAGAACAGTGCTCAGAtttgttgaatatattttttacaaaaaatattttatactttaacactatatttttcatttttatatactCTTGTTTTGGTGTGGtttgtaatgcatgtttattgttttatttttagataattgtcatataacaaaacatataaataagaATGTGCCCTGCTGagtttgacttttttatttttttgattctTGCATTTTTACTACAATAAAGCTGAGGTGAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6947 True 588 lncRNA 0.56 2 33438328 33445420

Neighbor

gene id symbol gene type direction distance location
AMCG00004100 osr1 coding upstream 190764 33241032 ~ 33247564 (+)
AMCG00004101 NA coding upstream 295790 33137636 ~ 33142538 (+)
AMCG00004099 NA coding upstream 302837 33132355 ~ 33135491 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding upstream 491412 32937405 ~ 32946916 (+)
AMCG00004093 NA coding upstream 537658 32876810 ~ 32900670 (+)
AMCG00004109 NA coding downstream 115604 33561024 ~ 33565863 (+)
AMCG00004110 NA coding downstream 302489 33747909 ~ 33761457 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding downstream 321626 33767046 ~ 33767636 (+)
AMCG00004115 NA coding downstream 459871 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 674151 34119571 ~ 34130023 (+)
G5569 NA non-coding upstream 826277 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 1050793 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 1054649 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 1088225 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 1128416 32309505 ~ 32309912 (+)
G5680 NA non-coding downstream 27616 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 29422 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 120753 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 152472 33597892 ~ 33600011 (+)
G5720 NA non-coding downstream 180947 33626367 ~ 33627507 (+)
G5642 NA other upstream 307142 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1035945 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2543501 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3131153 30296867 ~ 30307175 (+)
G5245 NA other upstream 3166804 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1407443 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2307030 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2581859 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2816368 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3242210 36687630 ~ 36697885 (+)

Expression


Co-expression Network