G5688


Basic Information

Item Value
gene id G5688
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33566173 ~ 33567479 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6976
gctCGTCTTCACATTGCCAGGAATATAGCCTCTTTATATGCAGTTGCCTTTAAATGGTCTCCTGCTTAGTTCTTGGCAATGATGCAAGAGCTCAATTCCAAAATACCCTTCTGCTTTCTGGTGTAATGTACTGAAGTTGACACTTGACTCATCAGTTCCTGGGAGGCTGTAGTGGTTCTATAGGATTATGTTCAGGTGGAacaaacttggattagcaagaCCAAGGAATTTTAGGCTTTAATACCCTCTTTGTATCTTTTGTTCTTGGTCTGTTAAAGTCTGTTTTAAGCTGAGCTTGGCATCTTCAAAACTAGGGTTTAGTTCCAGTGCTTTCCTGAAGTCTTTTTCTGCATCTTCATAAAACCTAGTCTATAGCGTATCAGCCCCCTGTTGTAATATGGAATGTCGAACTGTCTCTTTGTTTCGATTGCTGACGTGTAATCTTCCATTGCTTCGTAGAAATCCACTCTCAGGTACTTGATCTGTCCGCGGTTGTTAAAAGCAACAGCAACCTCATCAACGCGACCGCTCCTAAAGCAATAATGACACCATTAGACCGCATGTGTGCATCTTTAGAGCTACACACAATCCAAACTATTACAATACAGCGACTCGTCTCAGTGCTTTCTTACTTATTACGCGCACACGAGTCGATGAACTGCGTGTACAGATGTTCCGCttctttaaaatgcttttggtGCAATTCGGAATCGGCTCGTTTAAGAATATTTAACTCGGACGTTTCCATTTATTGGCAGTACAACACCGCAGTGAAACACGGCTTCCGTATTTGTCATCAAGGATACCTGCTCTAGTCGCATGTGTATGACGTATGACGCATGCCTGCCGCTGTCCATTCTCTCCCTCACCCATTGCTTACGGATCTTTATTTGGAAGAAGTGAGTCAGCTGTAAAACGTCAATTTTCTACAGACGGtactaataaataaaccattgaGCACCAACTCAAAACTAAAAAATCAGCCAGGTATGATGCAACAGTCCTCGGTTTGAATAACAAAACCGAGtacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6976 True 1032 lncRNA 0.41 2 33566173 33567479

Neighbor

gene id symbol gene type direction distance location
AMCG00004109 NA coding upstream 310 33561024 ~ 33565863 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 113501 33435750 ~ 33452672 (+)
AMCG00004100 osr1 coding upstream 318609 33241032 ~ 33247564 (+)
AMCG00004101 NA coding upstream 423635 33137636 ~ 33142538 (+)
AMCG00004099 NA coding upstream 430682 33132355 ~ 33135491 (+)
AMCG00004110 NA coding downstream 180430 33747909 ~ 33761457 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding downstream 199567 33767046 ~ 33767636 (+)
AMCG00004115 NA coding downstream 337812 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 552092 34119571 ~ 34130023 (+)
AMCG00004122 NA coding downstream 563647 34131126 ~ 34133612 (+)
G5681 NA non-coding upstream 91126 33474842 ~ 33475047 (+)
G5680 NA non-coding upstream 92843 33473036 ~ 33473330 (+)
G5662 NA non-coding upstream 120753 33438328 ~ 33445420 (+)
G5569 NA non-coding upstream 954122 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 1178638 32384435 ~ 32387535 (+)
G5707 NA non-coding downstream 30413 33597892 ~ 33600011 (+)
G5720 NA non-coding downstream 58888 33626367 ~ 33627507 (+)
G5731 NA non-coding downstream 118248 33685727 ~ 33768814 (+)
G5750 NA non-coding downstream 202110 33769589 ~ 33771848 (+)
G5768 NA non-coding downstream 324995 33892474 ~ 33893143 (+)
G5642 NA other upstream 434987 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1163790 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2671346 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3258998 30296867 ~ 30307175 (+)
G5245 NA other upstream 3294649 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1285384 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2184971 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2459800 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2694309 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3120151 36687630 ~ 36697885 (+)

Expression


Co-expression Network