G5721


Basic Information

Item Value
gene id G5721
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33626309 ~ 33627507 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7015
NNttgcattaatgagaaattgaacaggtgtgcctaataatcctttaggtgagtgtacatcacACAATACATTTAGCTAGGTAAAGAAACTGTTTTGGAAAGAATATTAGATCTAAATTATCTTCAGCCTGCAGTGCTGTTGTGAATACTATTCTTTTTTTCTATGAGTGAATAAAAAGAGTTGACGAAtcctgcttttttctttgttatacTTGCCTAtagacaattaaaattaaaataaattatgtaaacatATGAGCAGACATACAAACAATGCTGCACTTGCATCTGGAGATTGTCTAAGTAATATGAGCTTTCAACAACACGTTTACAACACACGACAGTGTTTAAACCTTTTGTAATTTTGAGAATGATGTTTAATGCAagtaacaatatataataattcttTATAAACTTAATGTAAAATGATCAATCATTGTAATGTACCtcaaatacattgtgtattCTATATTACTTCTTTGCTGATTGAACTGAACTACTaagaatatacagctctggaaaaattaaataagagaccactgcaaatttcttaaatcagcatctctacatgtatggcagccattccagccattccattccattcatatttgtatttgaaatttgggagaaatgttgtcaatagtttatagaataaaacaaaaatgtcaattttaCCCAaaaacatacctataaatagcaAAACCatagaaactgatcatttttcAGTGGTCtctaatttttttccagagctgtatatacattttaaactggtgTCATTTCTCTCAGATGACTGGATCCTTTCATATGGTTTGGGGTTTGGGGTCCTATGGATTGCAGCTTGCTACCTTTGTGAATATGGAAAGGAATAATTATTGCTAATGTGCTTTTTTGAGAAGGTACGGCAGTGGAACAGTATAGAGCACATCATTCTGTTGCCTTGCCcttcaaatgttaaatgttaaagtaGGCAGGTGATAGATCCTGACAtgaaattcagaaaataatggaGTAGGCATTCTTTCACAATTTTATATGCCTGTTATTATATAGTGTTGcatggttttttttgttttttgtttttttaaatagatgtgACTTATTTAATACCCTCTATTTTACCGTTTATATATCTAGAAGCTGAACTCAATGGAGTAAACTTTTTACTGAAAGCAATCAACTGTGTTGTTTCCTACTTTAATT

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7015 True 1199 lncRNA 0.31 1 33626309 33627507

Neighbor

gene id symbol gene type direction distance location
AMCG00004107 laptm4a,LOC107743288,LOC107726758,LOC107678852,LOC107603102 coding downstream 1716 33611596 ~ 33624593 (-)
AMCG00004106 NA coding downstream 19283 33599893 ~ 33607026 (-)
AMCG00004105 wdr35,LOC101483091 coding downstream 28920 33569310 ~ 33597389 (-)
AMCG00004103 NA coding downstream 69455 33554410 ~ 33556854 (-)
AMCG00004097 LOC104948289,LOC107579370 coding downstream 493996 33122592 ~ 33132313 (-)
AMCG00004104 NA coding upstream 5467 33632974 ~ 33645712 (-)
AMCG00004112 NA coding upstream 60447 33687954 ~ 33689966 (-)
AMCG00004111 LOC106607566 coding upstream 85150 33712657 ~ 33732193 (-)
AMCG00004114 NA coding upstream 147782 33775289 ~ 33776197 (-)
AMCG00004117 hs1bp3 coding upstream 268539 33896046 ~ 33899005 (-)
G5645 NA non-coding downstream 521094 33104725 ~ 33105215 (-)
G5570 NA non-coding downstream 1014965 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 1079303 32545377 ~ 32547006 (-)
G5552 NA non-coding downstream 1096471 32527683 ~ 32529838 (-)
G5539 NA non-coding downstream 1234199 32391883 ~ 32392110 (-)
G5805 NA non-coding upstream 664762 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 1245106 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 1249993 34877500 ~ 34878219 (-)
G5929 mut non-coding upstream 1275859 34903366 ~ 34906973 (-)
G6009 NA non-coding upstream 1845361 35472868 ~ 35475341 (-)
AMCG00004102 NA other downstream 58984 33566086 ~ 33567325 (-)
G5566 NA other downstream 1029902 32593627 ~ 32596407 (-)
G5540 NA other downstream 1199746 32407802 ~ 32426563 (-)
G5502 NA other downstream 1316399 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 2652813 30969679 ~ 30973496 (-)
AMCG00004116 NA other upstream 247934 33875441 ~ 33918321 (-)
AMCG00004120 NA other upstream 387861 34015368 ~ 34031547 (-)
G5801 NA other upstream 504591 34132098 ~ 34135600 (-)
G5871 NA other upstream 1264394 34891901 ~ 34892613 (-)
AMCG00004132 NA other upstream 1327199 34954706 ~ 34963885 (-)

Expression


Co-expression Network