G5750


Basic Information

Item Value
gene id G5750
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33769589 ~ 33771848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7059
ttaatagaGAGTGGTTTCTGATAATAAATTTAAGCATAAttgaaacaaatgttatttgtgATTGGTGGGTAGGTCTGTGCCTCACTGTTTTTAACACTAGCTTTGGCTTATAATGTATATGCTGTTCAGTCTAATCTTATAACATTATTCACCATTTGCATTGCTTTACTGAGGTTTTTGGTCTTGTATTTATCTGGTCCTTATGTATATCAATACAGGACAAGAAATTACAACATTACAAACTGCCCATGTCAAAGCAGTAAATCTAATCATGTGTAATTCTGAAATAGACTGAgttaatctatatatatataaagaagttAGAGTAACCAGTGAGAAAGTGGAATACAAAAGCAACCGCAGTAAACAATAATTTAAGACTATAACCTGTTATATCAGGTaaagaatggaaaaatacattaaaatcaatacaggATAGCTTGTAGAAATGCACAGTTTACTGCAGCTGTAGTGGTGTGTGAAAATCTCGGGTTGTATTCACTCAGAAAATGTGTTTCGTTAAGAAAAAGGAATGGGAATGAGTCCAGTATGAGTGGGCTAAGAGAGAGTTTCAAATAAAGCCTTTCCCATGAACTTCCCTGGAAATAATGCTGCAGTGGGGAAATGCATTTGCAAGCCAGCAGGACAGACCAttgctcttttatttctttacagcTGGTAACTCGATACCAGTGTGTTAATCTGCATATTTGGTTTAAAGATTGTATTAGGCAGCATTTTTTGAATTGCTCTTCCTGTGGGAACGAGGCACTTCAAATAAGATCATTTTGtgaaagcaatttatttatatttgaatccCGAGCAGCTCATGTTAATTAATCCTGCTAACTTTCTGCGGGTTTAGCCGGCCCCTATTAGGACTTATTTTTGAAAGCCCTTAGCATACATACTTTGGCATTAGGAAGTCCACAGAGTCCTAAGTAAAGTACAAGAAATTACTtggtaatatatattatgtactaagtgtaatatatgtgtgtgtgtatatattttatgtattaattcctTATATATTGTTAGGTTGTGGGGAATACTGTAGGGCAGTCATGATATAGCAGTTTGTTATAGATATTTCATTAGTCAATAGCTGAATAACtggaataaaattaaacattacaaagtaagcatgttattttctaaattaactaaCAGCTCAagtggaatgaaaaacagaagatcCTGCACCGTTCCAGGACCTGTGCTGGCCTCCTCTGCTTTAGGGTAACtatgagaagaaaataaatgaatggattttcataattacatttttaaatagttttttatattaacacagaaaatggaggcttaaattaaaaaacaaacaaaaaaaacatgcataatcAAACTAATTTACTCTTATCCCTTTGCTCTAGTGCTCTTCAAGCAGAATTAAGTGAAATTtgaatgcagttttatttgcattttgtatttaaaagtcTCCCAAAATAATTTGCTTCAAAGTCAGAGGCATGAAAACATGAGTTATTTCTAGCAAACAGATGTAATTAGATATAATATCATGGATTGTTACTATGAAAAGATGAAAGCATTAAAGTAATTGccttaaaaagataaaacaaataaatcctgATTCAGAGCACAAGAATACTGCCATCTTGTTCTtctaataaatgttatttatgttatatagGTCCTGAAAATCTACTGATTTCTGCTCACTTTCCATAAGAAGTGGTCCTGTTTGTCCTGGAATTATAGTGTGTGATTTTGCTCCTTTCATCTGCTTCACCATGAAAGTTCTGTTTAACCTTGGAGGAATCACAAATATGAAGTTGTGGAAAACGTTTGATGTGAATTTATTATGATTTCCCCTTGATAGCGCCTTAATGAGTTTGGAGAGTGTTCAAGCCTTTGTTCAGTGTCCTGGTTCTCAGGCTGTTAAATAAAAGGTATAAtgtgggaaaaaagaaaataacaaaaaggcaCAGCAGCTTTGGaaacaataattattgtatacTTAAGTAAATACTGCTTAGCTAAGATTTACAGTTATTCCATTCTCTTgctacattatattattttactgataGTGCCTGGATAATTCATACTAGTGGATTCTGTACCCTATAGGTGTGaatattaatgaatgtatttaaaccaCTGCAATAAAATTTGAATCTAATCttatctatctttttttttttttttactgtttttactATATGGTTTGGTGtaaatttcaatgtattaataattttctGGTTAAATAAAACCTAAC

Function

GO:

id name namespace
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7059 True 2260 lncRNA 0.32 1 33769589 33771848

Neighbor

gene id symbol gene type direction distance location
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding upstream 1953 33767046 ~ 33767636 (+)
AMCG00004110 NA coding upstream 8132 33747909 ~ 33761457 (+)
AMCG00004109 NA coding upstream 203726 33561024 ~ 33565863 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 316917 33435750 ~ 33452672 (+)
AMCG00004100 osr1 coding upstream 522025 33241032 ~ 33247564 (+)
AMCG00004115 NA coding downstream 133443 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 347723 34119571 ~ 34130023 (+)
AMCG00004122 NA coding downstream 359278 34131126 ~ 34133612 (+)
AMCG00004125 NA coding downstream 859373 34631221 ~ 34638669 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding downstream 894544 34666392 ~ 34685790 (+)
G5731 NA non-coding upstream 775 33685727 ~ 33768814 (+)
G5720 NA non-coding upstream 142082 33626367 ~ 33627507 (+)
G5707 NA non-coding upstream 169578 33597892 ~ 33600011 (+)
G5688 NA non-coding upstream 202110 33566173 ~ 33567479 (+)
G5681 NA non-coding upstream 294542 33474842 ~ 33475047 (+)
G5768 NA non-coding downstream 120626 33892474 ~ 33893143 (+)
G5787 NA non-coding downstream 306503 34078351 ~ 34080785 (+)
G5788 NA non-coding downstream 309978 34081826 ~ 34090122 (+)
G5804 NA non-coding downstream 520423 34292271 ~ 34292501 (+)
G5808 NA non-coding downstream 610020 34381868 ~ 34382099 (+)
G5642 NA other upstream 638403 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1367206 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2874762 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3462414 30296867 ~ 30307175 (+)
G5245 NA other upstream 3498065 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1081015 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 1980602 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2255431 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2489940 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 2915782 36687630 ~ 36697885 (+)

Expression


Co-expression Network