G5787


Basic Information

Item Value
gene id G5787
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34078351 ~ 34080785 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7121
tttgtgctgtgaatattttctttattaatgtcCTTCATTTAGAGTAAGATCACTTTGTCATCAGTATGGAAAACATACATGGAAACAGGATTTAATAAAGAATTGCTATTTATTAAGACATTCAGCACACTTAGAATAACctaaatgattataatatttaatttacaaaaaaataaaataaaaacaaaaaacagaaacagcttttaaaagaaGGTTGTCAGAATAATACCGTTAAATACATCAAGGAAGAGGATTTATGCGTTTACAATAACAAGTGTCCTTTTTGTTCTGAAGCAAGGATTTGTTTAATTGAGCAGTTTTCCCCATTTAGATGGTTGTGCTTTATACATCAAGGGAATCCAGAGGGAAGAGGGAAATCGATTTTAAACTTTCCCTCACTGACTTGAACGTATGGTTTCACCTTTTTTGAAAGCTCTTGAATAAAGGATAGGGTTTCTCTGTAAACTGACATATATGCGTcagttatatattgtataattttttccaaagcaGATGTAACATTGTCAAGTGACATTTGGTCATAGGCCTCTAGGATTCTCCTCTTGACTAGGTCTACATGTGCGCCAGCAGATCTTTTGGCATCGACACTCCATTCACTGATTTTCTCTTGTACCCTATTTATCACATCAGATATCTGTCGTCCTCTTCCTTCTGCATCGACAACCAGGTCTTTGGCATAACTGAAAAACTCTTCTCCCTTACTTCCAACCACCATTTGAATATTTTGCATGTACACTACAAAAGCCTTTGCCAACTCAATGATCTTCTCCTCAATCTCATAGTATTTGACAGTCCATCCAACCATGTTAGTGTCCAGATACTCTTCTCTGAGGGACTTGATGTATAGACTTGCCTTCTCAAGATTTTTCATGATTAAATTCAGCATTTCCTTGGTCCACCCATGCACTACAGCTACAGTTTGTTGTATCTGTTTCAGAGCTTCGTTAATTTTCTCTGCTGTGGGTGAATTGATGGCATCAGAGTACATCCCCTGGACTcgtgttttcatttcttctaGATTCTGGGATTTCAAGGCTGTGATTACTTCTTCAGCTTTCTGGGAGCAAGTCTGCAGAAAATCTTTAAATTCTTGAAGCATTTTCTCAAGGCTAATTTTCTGAAGGCTCTTCACAATTTCTCTTACTTTATCCTGGACTTTTCTTAAGACTATTTTAAGATCATCCAGTAGCTTCTTTCCAGATACGGTTTGGTCAGTACCAGGCACCTTAAACTCAAGCTTTTTGATGTAGTCTAATAATGCATCTGTACATTCTTCTAGGTACTGATCTACTTTTTGCATAATTTGGTCAATGTACATCATGACAGACTGGGTGGCTTTCATGTAGATTTGATGCCCTGTAAATCTTTCTTCATAACCAGGTAACTGAAACTTTGTCTCTCTAAGGAATTTGATGGCAGCATCAAGCAAGTCCTTAATTTTCTTCTGATATTGTCGAATTACGTCTTTTGTTCTGTCATAAAACTTGCTTCTTATCTGTTGTAGGTCTACACTGCCCAAACTATCGGCCacccttttatacattttcctggTTTTATCGTTTAGCTGTTCAAACTCACTCTGCAGCTGGCTAATTTTTAGGGGAAAATCTCTGTAGGATGTCTCAATAGTATCTGAAatggcatttttcatttttcgtGTAGCTCTGTTGATATCCATTCCAAAATGTTCGCGGTGGTATTTGTTAATACACTGGTACACAGCAGACATAATTCTGGGGACTCTCCGTTTCAAACCAGCCAGTATGTCATAAGAAACTTGAGCGTCCCAGTCACCTTCAATGTGGAGATTTTGGGGatttttcaaattcatttttgcATCCAGAATATTAACATCCTTATCAGGAGAGGacGGTAACGGCAGTACAGACTTGTGTGCACTCCTTCTGGGGCATCCCTTTCCAGGAGGAAACCAAGGAAGCCAGCAGACGGCGAAGACAGCGAGGCTGTGATTGAGTCCTTGACTGCCACATAACGGACACTTACGTCCACAAATGTTGGGCTGGTGATGTCAACAATCAGGGACTGGCGGGACGCTCTGCAAAGCAaggcatacattttaaaataacaaaatgattGAAGACATACACATGCACTTTCCCTCAAGACAGTTTTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko00591 Linoleic acid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU7121 True 2158 lncRNA 0.38 2 34078351 34080785

Neighbor

gene id symbol gene type direction distance location
AMCG00004115 NA coding upstream 165466 33905291 ~ 33912885 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding upstream 310715 33767046 ~ 33767636 (+)
AMCG00004110 NA coding upstream 316894 33747909 ~ 33761457 (+)
AMCG00004109 NA coding upstream 512488 33561024 ~ 33565863 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 625679 33435750 ~ 33452672 (+)
AMCG00004121 NA coding downstream 38786 34119571 ~ 34130023 (+)
AMCG00004122 NA coding downstream 50341 34131126 ~ 34133612 (+)
AMCG00004125 NA coding downstream 550436 34631221 ~ 34638669 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding downstream 585607 34666392 ~ 34685790 (+)
AMCG00004126 klhl29,LOC107742703 coding downstream 614618 34695403 ~ 34724610 (+)
G5768 NA non-coding upstream 185208 33892474 ~ 33893143 (+)
G5750 NA non-coding upstream 306503 33769589 ~ 33771848 (+)
G5731 NA non-coding upstream 309537 33685727 ~ 33768814 (+)
G5720 NA non-coding upstream 450844 33626367 ~ 33627507 (+)
G5707 NA non-coding upstream 478340 33597892 ~ 33600011 (+)
G5788 NA non-coding downstream 1041 34081826 ~ 34090122 (+)
G5804 NA non-coding downstream 211486 34292271 ~ 34292501 (+)
G5808 NA non-coding downstream 301083 34381868 ~ 34382099 (+)
G5867 NA non-coding downstream 813317 34894102 ~ 34895661 (+)
G5875 NA non-coding downstream 818851 34899636 ~ 35350027 (+)
G5642 NA other upstream 947165 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1675968 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 3183524 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3771176 30296867 ~ 30307175 (+)
G5245 NA other upstream 3806827 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 772078 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 1671665 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 1946494 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2181003 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 2606845 36687630 ~ 36697885 (+)

Expression


Co-expression Network