G5801


Basic Information

Item Value
gene id G5801
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34132098 ~ 34135600 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7138
agggaaagatgaatgcagcaatgtacagagacatccttgatgaaaaccttcgccccagtcggaggtccagagcgctctggagcaggttcatcttccaacaggacaatgaccctaagcacccagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagtccagacttgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgatgctccccatccaacctgatggagcttgaggtcctgcaaagaagaatgggagaaactgcccaacgataggtgtgccaagcttgtagcatcatactcaaaaagacttgaggctgtaattggtgccaaaggtgcttcaacaaagtattgagcaaaggctgtgaatacttatgtgcatgtgcttttttttttttttttattaatacattttgcacagaTTTCAAGCAAACTTCcctcacgttgtcattatggggtattgtttgtagaattttgaggaaaataatgaatttaatccattttggaataaggctgtaacataacaacaaaatgtggaaaaagtgaagcgctgtgaatactttctggatgcaccgtgtgtgtgtgcgtgtactaAAGTTATAAAAGTATTACTTAATATAGGTATGGgttcatgttttatattcacTATGTATGGACATCATGAAGGCCATCAATCACTCTTATTTGAGAACCTATCGTATTCTGGTCTGTGAATTAAACTGACATAGAGGAATTATCTTCACCTTTCAAAAAGAAATATTCTCTTGAAgtcaaaattaacatttttgcgACTAATGCGTCTTTAACTATTGTGTTATCCATCAGGCTATTGAAGGAACTATAGCTTAAGTATGAAGCATTTATAATGTTTCATGTGTAAGAATGCTGCTGATGCATAAATATAATCCCTCATGCACTGGAGAAAAGAATCTGGTTGTTTCAAAGCACTACCTGCGTCAGCCTGCAGGCTCCTTTGAATGAACTCACTGACTAAGGTGGAACTGTATTATCTATACAGTTACTATATATGTAACTATATGCCAATTTTGATGTTCAAAACAATGTAGATCATAAACTGCAATCATACATACCACAGACATTCCAATCTTTTTTTCCTGACTACATTTCAGCAGAGAACAATACAAGACtctaatacaaaatatttagtgTGCTGTGTATTAGGAGATTTTTTTCAAAGCTGATATTAGCAAGCTCCACTACAGAACAAACTGAATATCCTACAACAGCACACTTTAAACAAACCCATTTGGTTTTAAAGGAAATGATGCTCATGCAAATGCTGCCATCTTTTGCTTTTGTCATTctactttttttattcttccacCACAGTCTGAAGATAAAAGCCTGGCCTACAGAAGAGTACTCCCACTGGATAGGATACATTGAAAAGTATTGGCTAGCATTCCATTTCCACACAATTCTCCTTGGTGACACACTTAAAGCCTAGAAACCTCGCTGATTACAGCTCCAGTTATCAAGATGGATGTTCTGCCCACAGTGCCTTAAGTGATTTGAATACACAATATGCCTTGATCCTCCATATCAAGAACTAGACACCAGGAAAGCAGGGTTTACAATCTGTCAATCTGCTTTCATCTGCTTTAGGTTTGTCCTTATTACCCGTGCATATTGCCagctaaattaattcaaatgcacatattttaaagtgatcgaaaagtacagagaaacacaaaattgaTCTCTAAcaactaaatattaaatgtattaacaccGAGTATTATTCAGTTctgaatttaaacttttttttgacTGTACACATACTTTTTTAGTCCTGTATGCTTTAAAATGAGTTTATATAGTTAGGTCTCCCTTGTGATTCCTGTCACAATATTTGtcggagtgtgtgtgtgcatgatttaaacaaattagtgtctctctctctcaaacaatACACCTTAGGCACAGTAATGCcacaacatatacaaatatttattcttcAGATGACCTGTTATAGAAAAATCTGTGTATTCTCCATtacatgcaaaaatatatttttcatcactTTCAGATctataaacattatttatatctataagtaacctgaaattatttaatatggtGATGAAACTGAACAACTGCTTTCTCTTGCTCGTGTGTTTCTATGGAGCCCCTTCGAAGTCTTCGTATCTCATTGATTGCATCAACGCCCATGATTTTCTTCTCCTTCACCAGGTAGCAGGCGAGCATGGTCCCTGTCCTTCCATGCCCATGAAAGCAGTGCACAGCAACTCCCTAAAATTCCCCCTTGGAGTTGGCCGCTTCGACAATGGAGAGGAACCGGTTGATCTGATCCAAGGTGGGTGGACAGAAGTCGTCTATTTTTATGTGATGCAGTGTCAGTCCGGGACATGTATCATGATAAGGAGGCTTTCTTTCACAGAGGGTCACCAGGTGCCGTATGCCATTGTCCAGCAAGAACTGATAGTGCGCAGGCATCCGGGGCATGGCCATACCAGCCAGCTTTTTTGGTTCCACCCAGGAGAAGTTAGATGGGCATGCAGAAGCCATTACTGCAGTACAATAA

Function

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7138 True 2604 TUCP 0.41 2 34132098 34135600

Neighbor

gene id symbol gene type direction distance location
AMCG00004123 NA coding downstream 1103 34078179 ~ 34130995 (-)
AMCG00004119 NA coding downstream 163441 33949967 ~ 33968657 (-)
AMCG00004118 NA coding downstream 192973 33928514 ~ 33939125 (-)
AMCG00004117 hs1bp3 coding downstream 233093 33896046 ~ 33899005 (-)
AMCG00004114 NA coding downstream 355901 33775289 ~ 33776197 (-)
AMCG00004129 NA coding upstream 584764 34720364 ~ 34738000 (-)
AMCG00004131 LOC107603081,LOC107742719 coding upstream 636900 34772500 ~ 34794138 (-)
AMCG00004130 NA coding upstream 700823 34836423 ~ 34849187 (-)
AMCG00004134 NA coding upstream 785011 34920611 ~ 34924533 (-)
AMCG00004133 NA coding upstream 811274 34946874 ~ 34949603 (-)
G5721 NA non-coding downstream 504591 33626309 ~ 33627507 (-)
G5645 NA non-coding downstream 1026883 33104725 ~ 33105215 (-)
G5570 NA non-coding downstream 1520754 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 1585092 32545377 ~ 32547006 (-)
G5552 NA non-coding downstream 1602260 32527683 ~ 32529838 (-)
G5805 NA non-coding upstream 156669 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 737013 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 741900 34877500 ~ 34878219 (-)
G5929 mut non-coding upstream 767766 34903366 ~ 34906973 (-)
G6009 NA non-coding upstream 1337268 35472868 ~ 35475341 (-)
AMCG00004120 NA other downstream 100551 34015368 ~ 34031547 (-)
AMCG00004116 NA other downstream 213777 33875441 ~ 33918321 (-)
AMCG00004102 NA other downstream 564773 33566086 ~ 33567325 (-)
G5566 NA other downstream 1535691 32593627 ~ 32596407 (-)
G5540 NA other downstream 1705535 32407802 ~ 32426563 (-)
G5871 NA other upstream 756301 34891901 ~ 34892613 (-)
AMCG00004132 NA other upstream 819106 34954706 ~ 34963885 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other upstream 1209063 35344663 ~ 35414446 (-)
AMCG00004178 NA other upstream 2360172 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 2633448 36769048 ~ 36779062 (-)

Expression


Co-expression Network