G5867


Basic Information

Item Value
gene id G5867
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34894102 ~ 34895661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7220
tatcttgtACAACTACTTGTCGAAATCCTTGAAAAATGCATTCGGAAGAGGAACCGTGCAAATGCTATAGCAGTCTCCATTCTTTAAAACTACAATCTGACAAGAAAAGATTGCATAGATACTTTCTCGGTCAAAGGTAAAGACGCTGAATGCTGAAGCACAAATGTGTCCCAGTGAATGCTTTaagcttcaccctacaccctcgctcactcaagtgcactctgtgacgtcagcacaattCTATAAGATTACGAGAGATCCACACAGCAGTCATCCAAGACTACAACAGGTTTGGAGATATCAGCAGTTTGATTTTGGCCACTATTGATAGGGTACTTAAAAGGCACAAAGTGGGAATGAAGCAACTTTACAAGGTCCCAATTCAAAGAAACAGTGAGAGTGTGAAGGAGTCTAGACTCCAGTATGTACAGAGAATAATGGAGCTTGAAGCAAACGCAAGACCCCATACATTCATGTGGATGAAGCCGGCTTCAACCTTTCCAAAGTAGGGAGACGAGGGAGGAACCTCAATGGTAAGAGGGCCACTGTAAATGTGCCAGGGCAAAGAAGTGCAAACATCACCTTGTGTGCTGCTGTCTCTAACGATGGTGTTCTTTGCCACATCCCTAAAACTGGCACATACAATACAGAACATCTCCTCACATTTCTTGATGCATTGCACCAGAGAGTGGTACCACCAGAAGAGAGAGTGCTGGTGAGGCCTGACATGTCCCACTTCGCCATCATATGGGACAACGGTGCTTTCCATAACTCCCGGCTGGTTTCTGAATGGTTTGTAGCCCACCCATGACTGATGAGGCAGTTTCTCCCTCCATACTCTCCTTTTCTCAATCCAATCAAAGAATTCTTCTCTGCGTGGAGGTGGAAAGTATACGATTACCGTTCACATGACCAGATGTCTCTCCTAGATGGAATGAATGCCAGTTGTCTGGTTATCATTGCAGAGGACAGCCAAGCGTGGATGCACCATGCAAGGAGATTCTTTCCTCGCTGTATTGCGAGGGAAAACATCCAGTGCAATGCTGACAAAAACATGTGACCTGATTGACAAGAACGAATGGACTAAATgtgttgtatactgtattttctgttgccttttttggcattgctttatttttcatagcttggtgtgttatttttattctctgCATATACAGcagcattgcattttaaaggacaaaattaaaaaggtgaaataaagcctttcttttgtttctgaatCTCCTGAGTGACATTCTGTTTGCATTGGTCATCTTTGGTAAAttcattttaggaaaaaaagaatacagCCTATGCTTCTGATGTTTACTTGCCTTTTATGGTACATACTATAACAACAAAGTATCAACAAATGGCAGACATATAAAAGAGGGTTAACCATGTTGGGGTATATTGATAGTTTTATTCATTGGG

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO:

id name namespace
GO:0030119 AP-type membrane coat adaptor complex cellular_component
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7220 True 1434 lncRNA 0.42 2 34894102 34895661

Neighbor

gene id symbol gene type direction distance location
AMCG00004128 NA coding upstream 59987 34820168 ~ 34834115 (+)
AMCG00004127 NA coding upstream 85680 34798389 ~ 34808422 (+)
AMCG00004126 klhl29,LOC107742703 coding upstream 169492 34695403 ~ 34724610 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding upstream 208312 34666392 ~ 34685790 (+)
AMCG00004125 NA coding upstream 255433 34631221 ~ 34638669 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding downstream 68805 34964466 ~ 34977633 (+)
AMCG00004139 NA coding downstream 276815 35172476 ~ 35173032 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding downstream 311870 35207531 ~ 35210874 (+)
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding downstream 343571 35239232 ~ 35248925 (+)
AMCG00004149 NA coding downstream 461761 35357422 ~ 35359998 (+)
G5808 NA non-coding upstream 512003 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 601601 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 803980 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 813317 34078351 ~ 34080785 (+)
G5768 NA non-coding upstream 1000959 33892474 ~ 33893143 (+)
G5875 NA non-coding downstream 3975 34899636 ~ 35350027 (+)
G5914 NA non-coding downstream 405442 35301103 ~ 35306949 (+)
G6002 NA non-coding downstream 560015 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 570201 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 924594 35820255 ~ 35820483 (+)
AMCG00004138 fkbp1b other upstream 23782 34852863 ~ 34870320 (+)
G5642 NA other upstream 1762916 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2491719 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 3999275 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4586927 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 856789 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 1131618 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 1366127 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1791969 36687630 ~ 36697885 (+)
G6314 NA other downstream 1878340 36774001 ~ 36774523 (+)

Expression


Co-expression Network