G5875


Basic Information

Item Value
gene id G5875
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34899636 ~ 35350027 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7229
CCTCAGTGAACGCTACAGTTTTTAAACTAATTGGGAAAACAATATGTCATCTCAAAATAAAGCTGTTAGACAATTAACTCACGTAGCCTGTGGGCCTGCATGGCTTCTTCCCTGCAGTTCATCAACGAGATTGAAGAAATGGGAGGCATGGCACAGGCGGTGGCCGAGGGAATCCCCAAACTGCGCATCGAAGAGTGTGCCGCCCGCAGACAGGCTCGCATCGACTCAGGTTTCCTCTGAATCACTGGATTGCATCCAGGCATCACTGAATTTATGAAATTTTCCTGAGACTGTAAACaccaatacaattattaatctTGACTGAAGGCAGTAATGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7229 True 339 lncRNA 0.46 2 34899636 35350027

Neighbor

gene id symbol gene type direction distance location
AMCG00004128 NA coding upstream 65521 34820168 ~ 34834115 (+)
AMCG00004127 NA coding upstream 91214 34798389 ~ 34808422 (+)
AMCG00004126 klhl29,LOC107742703 coding upstream 175026 34695403 ~ 34724610 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding upstream 213846 34666392 ~ 34685790 (+)
AMCG00004125 NA coding upstream 260967 34631221 ~ 34638669 (+)
AMCG00004149 NA coding downstream 7395 35357422 ~ 35359998 (+)
AMCG00004145 NA coding downstream 48353 35398380 ~ 35406953 (+)
AMCG00004150 NA coding downstream 101044 35451071 ~ 35455522 (+)
AMCG00004151 NA coding downstream 107127 35457154 ~ 35458783 (+)
AMCG00004157 NA coding downstream 292969 35642996 ~ 35684393 (+)
G5867 NA non-coding upstream 3975 34894102 ~ 34895661 (+)
G5808 NA non-coding upstream 517537 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 607135 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 809514 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 818851 34078351 ~ 34080785 (+)
G6002 NA non-coding downstream 105649 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 115835 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 470228 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 811579 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 1145813 36495840 ~ 36520594 (+)
AMCG00004138 fkbp1b other upstream 29316 34852863 ~ 34870320 (+)
G5642 NA other upstream 1768450 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2497253 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4004809 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4592461 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 402423 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 677252 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 911761 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1337603 36687630 ~ 36697885 (+)
G6314 NA other downstream 1423974 36774001 ~ 36774523 (+)

Expression


Co-expression Network