G5914


Basic Information

Item Value
gene id G5914
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35301103 ~ 35306949 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7270
GGACTTTACACATacaagattatatttatcagatTTGAACCAAAAGTGGGTTTTTGGACACAGTGCGTTGCTTTATTGAAATGAGAGGCCTGGACAAAAGGATAATACAGCTGCATCCAAAGAGCAAGCACTAAAAGGAGCAGCcagcaacacattttaattgagaaGATGAGTCCATGAGACAGGGCCTGATTCAGACAACGATGCCACAAGCAGATATATACTGCATGCATTACAGATGTGGGAAAATCAGacaaccacattttttttcaaggaaatgcattttaatatgaatggtTCCTATTTAACTTTAACAGTAAAACCTGAGTTTTAAGTGTTGTGCTGGGTGACAGCAAAGCCAGTAAAGCTGAAGTTAACTCAGCTCTACATTAAGCTCATTAACTTAGCCAGTAGCCTTTACATCATTCTCTATATAAGTTTTAAAAGGCTAAGTGATAAAAAAAGTGTggctgcaaaaaaataattaataataattatagagAGATGAGGACTCTGTGACAAGAAGGATCAAAGACAGAGCAGATGTCAGCCTGTATTTACTGTCTGTATAACAGTGTATCAAACTGAAGGCTTACAGATTTACTGGCTCTGTAAAAATAGTTGAGAAAAATGTGTCTGAGTCTGTTATGAGACATGTTTGACATTAATGCTTCAGTGTATATTATACAGCTTTGAAACTTTTAGATTTAGGCGACACAACCCAAGGACAGGGGGTGGTAATGTTTAGATACTAATTAAAAGCCAGCGAAGGCACAGTCCTATTCCACATGCGCTTACTCATGTGGAAAAGAATAGCAAtcgagatttattttttttgaaaaAACTGTTATTCCTGGCAGTGATGTCATTCAATAAATAGAATTTGCTGAGTGATAAATCATACATACTGAGATTTCTGAGTCCCGGcagcaagaaaaaagaaaagcagttttcaaAAACGGGGATCGAATGACCAGAAATAGGTATTTCATCTTTGAGACAGACACAAAAGCACCACTTTGATCTCTTGTTAAGTAGCTGCTATTAACGTGTGTTGGTAGCCAAAACTTTCCGAGGCAGACAGTGTCATGTATAAAACTCACATTCTTGTAAGTCAAGGACAGGAGTAGCATGAACTGACTGAAACATTTTAGACTCTGTTAGCTAAGTGAGAAACATGgcataatgtgtttttctttgtgtctaCTGCTTAGGTTCACCGAGAGTACCTATTTTATGTACGACTTGGGGTTCTTGATTTGCCGAGGTGATTATTATATTGCAAGtgttatactatattatactatgCCAAGGCGATATATTGCGTATTCCATTCTCTCTCTTCCGTTATGCTTTAGTTTACTTGAAGGTTTTAATTAGACAGAATTATATACTACAAATTACCTCATTTTCAACAGAGCTACATTCAGTAGATGTAGTAGAAACAAGTGTTTTCATATACAGTACGTagtaaactgaaacaataatagATCCTATCAAATTAGAATTTATGTTGgtcataacattttTGTACATCATATATCACCTTTAATGTTAACACTACTTACTGCAGGTgttgaaaatgcatattttacacCTTTAGGTACAAAGAACATGTAACTCTCATTTTTTGAAAATAGACACTTTTATTTCAGCATCAATCAGTGCAATCTGAGACACAGTGTTTAACTTTCTCAGTTGTTTTGTCATCCCAGTTCATACCACTGAAATTGGTGTATTGTACATACTAAAGGAGAGGCTTCGCAAACCTTCTGTATCTTAGTCTTACAAATCAGGACCGAGATAAGGGAGGCCAACACAGTTCAATAACTTTCTCAGTTAGACTGCCACCAACAGAGAAAAGACAGACCTAAaaaattaacacattcattagaaatatttatttcagtgtgttATTCAGAAGATCAATCGGTTTGTATGTTGATTTTCAGCAACTGCCTGAATTAGAAAATTCCTTATTGACATGATATACTGTCAATATAACTACAACACAACTTCGTCCGTAATCATTCTGCATACAGAGTCCCATTGCAAAATCTGGCCACTGTGAATAAACTATAGTCCAAACAATAGTTCCCATTTTGAAGGGAGATGAATTTGTAGTATTTCATGTATTCTTATAATTCCACGtataatgtttcttttaacagtGATTGCctgtataaaagctttgtttattttacagtgcctatacttatttattatatcaGTTATTGGGCTTATAAAATACAACTCTAGTATCTATGTCATtcgctgtgctgtactgtgccaGTAATTGATGCTTTTTTAACAGGCTGTCATGCTTAACAAGGTTTCTGCcatactattaaaaaaatatataatatatatatatatatatatatatataaaatgtaattcagctAAGTGATATATGACTTTTCATCTAAGGAGTGTAAAATGCAAGTGGCAGTTAGCAAAAAGAGCAGTCACTTTGGTTCTCTAAGGCAGATATATCAGTCTGGGGTGGGAgctgcatttaaaagcaaaaaagcacAACAGGGAATTAAACAACATGTGGGTATCCCCAGAGCAGCGGTAAAGACTGAACTTCAGCACAGCCAAGTGCGCTGGAAAATGTGAAACTGGAGAGTATCAGCAGGGGGGCAATAGCCAAGGCACATTAATACTGATCCTACTGAAAAGGGTGAACCTTTAtctgcatacatatacatatggtAAATGTTTCTAACAGCTGAGGGCGCTGTTGCCTTAGTTTGGAATTCTGTGCTCAAATCCCTGTCCTTGTGCAATGTTtgtgttgtaaaataataatttgtatctCTTTTTGATCCAAGCTGGCCTGCATCATTTATGCTGAATAATCTCTGTTTTGTCAGGATTTCCTGTTgcagctttaaaatgttttttactcTACAGTCCAAACAATTCCCTcagatattaacatttttgctAGTTCAATGCCTTGCAAATGAGTATTTATAAAACGCATTGGCCATGTGATTTCCTGAAGACAATATCTAAATCCTTACACAATGACATCATACAtattgtcagtcagtgtcagatTTCCTTTAAGTCATAGCAGGTGCAAAAACACAGGTGTGGGACAAaccttgaaaaataaaccacattcaGAAGATAAAATTGAATACTTATAAACTATTAAAGTTAAGATTGTACACCATGATTAATGGTATCAGCTTACCTGTTAGTGATATTTTGGTCAGAAAGatcaatttcattttgtttgggttttacCACAGATAATATGaatagtatgtatatattttgatattacaATAACACTGAAATATGTGTGGTGAAGATTACCAAGTTTGtgaattatacttttttttttttttttttaccatttgcTTACACAGTAATTATTCACACCTATTTGATATAATTCTATACTCTTACAATTGCATGCAAAATATTAAGCAAATATGCCTAGCCTATACCCTCATAAACACGTCACATTCTCTGTTTTATTGGATGGAAGCATTGGTTTTAATAGTGCCATCTATGcctaaaaagtaaattaaaaatacttcatggtacaatgtaatttgaaaacaattctGGTATACTGTTGAACTCAGGTATACCTTCAATACATGTGATACAGTAGACTATTGTGTTTTCTACTATGAAATATATCCTGCTTTCATTTGAGTCACTGTAATTTCAGCTCATAATTATAAATTGACTCCTTCCTCATTACTTGTCGCTGTAGTTCTATCAAATCAGACATATGACCGACAAGAGGCAGCTGTAATTGAAATAACTGACATCCACGTGGCCAAACGACAGATCATTTTTACACTGCAGTTTACACTGAGATGTGCTGTAAAGTAAATCTGGATGAGAAGGAGCTCAAGCTGCAATGAGAACAGACTCTTGAGATATTCAATGGACTGTTTCTTGTGTTTAGATTAATAAACAAGTAGTAAACAAAAGATCAACAAACAGCAATTTTTTTCTATTGTTCCCCATTAcactctgaaatgaaaatgttaaattaagtaTAGAAATGTTCAAATCAGTCTTACAATTAAGCTGTACAATTAAGCTTGTAATTAAGCTGAGTTGCCCTTTCTCAATTTCTTCAACaacatataatgtaaatattttttttatttatttaagatcaATATATAGGACAGAATGAACTCAGAGACattagcacatttaaaaactcttCACTTTCTCAGTCTCGACATGCCTCGACACATGCATATCACCATCTGACCACAGGACCAACCCAAAGCACCTTAACTGTCAATTAGGGTCACAATGATTCAAGATTTCTGATCGTTACCTTTGGGATTGGGCGTGTACAGCACTGTAATATTACGCAGCTAGAAGAGCAGCAACCAATTCGAGCACAGCGAACACTGACATAGTCAAGAGCCTAACCTCCCAGGATCTTAGATACTGCTAAGTTAGTTCAAATGTTAGAATATCAGAAACTGAAACTGTGTGAGGTGTTTTGTAAGTGTATTAATGAATGGGAACTGGAAGCTGTGACatgtttatgattttatatGAATGGTGGTGTATGGAAGCAggcgtgagtgagtgtgtgtgtgtgtgtgcgcgtctgTACACAAGCATTTCTTTGgagtttaaaaacattgcagttAGGTGTCAGTGCTGATGCCATTAAATAAGAACACGTTGaacttataaaaataatttattgattgTGGCAcccattgtattttaatcatcACTCGGGTggctgtttttgtctttgtctttctaCTGGATAATTAAAATCAGGAGAAATCTTAGACACAAAGAAACACTGAGGGTTTACATTTGGGTTAgcaaaattgaattgaatttcgGTGATATGAAGTGAGGGCTATAACATTTTTCTGGGAAAAAATCTGTGACGATTTAGGCCTATTGAAACAAGGTTTGTCCCAGTCAAGCAGATATTGATACTGATAAATGGTCATGCCACGAGGAACGAAAATGGCAACAGCAACCAGTTTTTAAAGATTAAGATTCTACGGATACCATTTTCATGGTTTCTTCTCAGTGTTCATCGCTCACTTTGACAGCCTCTTTGCCACATCCATGTATGCTAACTCAATCTCCTTGTCGGCTGCGCAGGTGTTGGTGAACTCGTCCCTGGTGTAGGCGTTCTGCAGATATCGCCACACTCCTCTCATCTCTGTGGGGATTTCATAGTTACGGTACTTCTTTGCTACAATCTGACTATGTGCAGTTTTGGCAGGAGGTTGCAGTCGGCCAGGGTCAGATCGTCTCCATCCAGGAACTTGCGGTTCGATGCCTTCTCATCCTCAGCGCTGTCAGCGTCGATCTCGTCAGGCAGAGGAGTGTTCAAGTAATTGTCCAGCTTCCACAGAGCCTTGGCCAGCACCTTCTCCAGCC

Function

NR:

description
PREDICTED: microtubule-associated serine/threonine-protein kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7270 True 5412 lncRNA 0.51 3 35301103 35306949

Neighbor

gene id symbol gene type direction distance location
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding upstream 52178 35239232 ~ 35248925 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding upstream 90229 35207531 ~ 35210874 (+)
AMCG00004139 NA coding upstream 128071 35172476 ~ 35173032 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding upstream 323470 34964466 ~ 34977633 (+)
AMCG00004128 NA coding upstream 466988 34820168 ~ 34834115 (+)
AMCG00004149 NA coding downstream 50473 35357422 ~ 35359998 (+)
AMCG00004145 NA coding downstream 91431 35398380 ~ 35406953 (+)
AMCG00004150 NA coding downstream 144122 35451071 ~ 35455522 (+)
AMCG00004151 NA coding downstream 150205 35457154 ~ 35458783 (+)
AMCG00004157 NA coding downstream 336047 35642996 ~ 35684393 (+)
G5867 NA non-coding upstream 405442 34894102 ~ 34895661 (+)
G5808 NA non-coding upstream 919004 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 1008602 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 1210981 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 1220318 34078351 ~ 34080785 (+)
G6002 NA non-coding downstream 148727 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 158913 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 513306 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 854657 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 1188891 36495840 ~ 36520594 (+)
AMCG00004138 fkbp1b other upstream 430783 34852863 ~ 34870320 (+)
G5642 NA other upstream 2169917 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2898720 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4406276 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4993928 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 445501 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 720330 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 954839 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1380681 36687630 ~ 36697885 (+)
G6314 NA other downstream 1467052 36774001 ~ 36774523 (+)

Expression


Co-expression Network