G6002


Basic Information

Item Value
gene id G6002
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35455676 ~ 35455887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7378
tacaTGTTAACCCTGaagttaacattaacattttcattacagGTACAGAATATGATTTCCTCACttctgaaaataacattaactaaGCCTTTTTTTCCACATTCACACTGTTCATTGCAAGCTTTCCTGGAAAATGCATTCCTACACAGCACATTAATTGACAATTAACACCATTGACAAGTGAACAGATGTTTAATCACTTCCCATAGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7378 True 212 lncRNA 0.47 1 35455676 35455887

Neighbor

gene id symbol gene type direction distance location
AMCG00004150 NA coding upstream 154 35451071 ~ 35455522 (+)
AMCG00004145 NA coding upstream 48723 35398380 ~ 35406953 (+)
AMCG00004149 NA coding upstream 95678 35357422 ~ 35359998 (+)
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding upstream 206751 35239232 ~ 35248925 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding upstream 244802 35207531 ~ 35210874 (+)
AMCG00004151 NA coding downstream 1267 35457154 ~ 35458783 (+)
AMCG00004157 NA coding downstream 187109 35642996 ~ 35684393 (+)
AMCG00004163 NA coding downstream 379886 35835773 ~ 35837710 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding downstream 611693 36067580 ~ 36073621 (+)
AMCG00004159 NA coding downstream 658614 36114501 ~ 36128960 (+)
G5875 NA non-coding upstream 105649 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 148727 35301103 ~ 35306949 (+)
G5867 NA non-coding upstream 560015 34894102 ~ 34895661 (+)
G5808 NA non-coding upstream 1073577 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 1163175 34292271 ~ 34292501 (+)
G6007 NA non-coding downstream 9975 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 364368 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 705719 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 1039953 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 1070781 36526668 ~ 36539067 (+)
AMCG00004138 fkbp1b other upstream 585356 34852863 ~ 34870320 (+)
G5642 NA other upstream 2324490 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3053293 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4560849 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 5148501 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 296563 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 571392 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 805901 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1231743 36687630 ~ 36697885 (+)
G6314 NA other downstream 1318114 36774001 ~ 36774523 (+)

Expression


Co-expression Network