G6102


Basic Information

Item Value
gene id G6102
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36161606 ~ 36165870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7487
TCAAGGCTTTTGTCGGGTGGGCGGGGGGGAGAATCACAATTAGTCTAGTGTTCAGTTTGAGTTAATAGCTTCTAAacccaaaaatatatactgtctctgcatttcactttttattgcaatttcccaaaaaaacaccaccataCAACTTTACAGTGAAAAGATCGAACGGCATTGCAATGGCTCATGTTTCATACTGTGCGAATTAGTtcatcataaaacatttacacgTTGACAGACTTCATACAGTacatcgtttttttgtttttttttacactgaaaaGAGTGACTTTTATATTTACAACtgctacagtacagcacataggatacaaacattacacaaaGTCATTGGACAAATATGAACTTTCTCATACACAAAATTAAGGTTGCGGgtattttctttctccagtttcaagagaaaaataaaaatgttttgacctttttttttttttttctccttgaaaGTATCTAAGAAACTAATTTACCAGTATTTTGCAGTGTACCTAACTAAAGCTGGGTCCATAATGctagccttttttttctttttttcttgtttctttttaagaattctcaatggagaaaaaacacattgtgaagTCTCAAATGAATCACTCCTTTTCTATTGGACAACAAGTGGGTCCTTTAGGAGCCACTCTGGAGAACTTCTGAGAGAGTCAGGCACAGCATGGAGTAACACTGGTAGGCAATCTCTCGTGTCGTAgtgcaaaattgtatttatttttcctaaatGTGGTGCATACTTACAGAACCTCAGACCTTATTGATGTCCCGAGTTCTTCCTGTGACTACAATTTACACTGTGAAGTCAGTGTTCCTAATTCACTTTTGATATCAAGATGCTAAGGGCCTCAAAGTCTACAAaagtcaaaaataataatttaccaaCAGACAAAAAAGGTAGAGGTAGCCAAAATGACCTACTGGTgcaggctttttatttttgttttattcagtttggCAGTAATGTGTACGTGAATGTGCCCAccgtgtttttttgtttgtttttttaaagcttaattTAATTCAGGTTTATAATATCTATTGCTGAATTCAATAGATTCCCTAATCAGACAGTACTTTTGTCTGTCATTTAGCTTTTACCTGCATAAGAAAGACACACTACCTTGCTCACCCTGCGCAAAAAATACCATGCCCTTCAGTCTAAAGGAAAGGCTGTAATGAAACGCACGTACACACCagctggtttgtttttctggattcTGCGGTGTTCATTCTCTGAGACATGCATTGCGTCTCTTGGTGGTTACCCCATTTTACTTGCTCTGTCAGCTGCAATGTTACACGGCACAGAAAAACACCTACATAGTATATCACTCTAACAAGTAACGCCCAAAGAAGCAAATGATCGTCCTTAGTGAGACATGGCGAGAGACTTTCAATAATGGAGAGTAAATTCAGGGAGGCGCCGGTAATGGTTTCACTTAACGATTTGatggtgtttgttttgatgCAATTCTGTCAGTTTTATGTAGCAAAGCAATTCTTATCTAGACCTCCTCTTTAGATTAAGGCCTGCTTCTGAACCGCCACTATAGCATAAGACATACGAAAGCAATGGATCATTATTAGTTACAGTTGCATAAACCTACAAAGCTATTAACGGCCTCATTTAGTGCAGGGTGCTTTCTAAGTTAGTGGCATTATTCAAACAATTCTGTCGTTAAAATTGGGCACCTACGGCCTGGTTCCATTAGTATACATCTCCAATTTCATTGTTCTGTGGTGCACAGTTTTCAcactatttcatattaaattaattaaatcagcaGCCTATATTTGATCtgtgtttatgattattattattattattattattattattattattattattattattattattatttttgtattacaatcTGTATTTAGCCAGAACTTAATTGGTTTTTCTGGTCAAATTTGTTTCCGGAAAaatattttggatttaattgaaaatatgcatCTGTGTCAAGTCCTAGTGATTAACCTGATTTTACTATTTTCCAAAATGCAGCATTATTGATTTTCCTTTACTTTGAGATTTGCTGCGAAAGTTAGTCATTTTCTCTGTGAATAACTGCTGATGCAAACAACCCTGTGGTTTGCAGCTATTTTAGATTATAGCAGGTTAACTGTATATTGAAAACAGATGGCGATAATGGTCTCTCTTTAATTTTCACCGTTGCAAACGCAGCCCATGTGTTTGTACAACCTGTGCAGTGCCAATGGCCTTGTAGATATTGCATTCTTCTTTTAGAATACCCATTTAACACCGGTTAACTGAATTCTGTTACTTGCACAGGCTGAAATCATGGCCACTAACTTCAGATATTTTAAAGAGGCCTTGTGTATAATGTAGAAGTACAGCCCATGCAAATTTACTCTTGTAAACCTTCATAAAGACTTTAGCCCATGTGTCTGCTACTAAAGTTACGGTAGACTCCCACCAATGTATTATCCATTTATCAATACTTGTGTGGCCTTGCAATGTTGTTATTAACTATTCCTAtccaaatatgttttacaaatattgataaaatatttaaattaaaaatatattttcctcatATCAAAACTGACCAAAAATATACATCTGTTTCTAGATTTTTCATTGACAGATTGTAGCTGTAACcccaatatattttcttcttagtCCAATCCCTTTTCAGTCCTCAACTTAATCAAACTTTGACTTATCTATCAGGTGCAAAGGAATAAAACCCAGCTCATGATACTAGCATGTTTCCCCTGGGTTAAAGGAAGGCGCCTCTGACAAACACAAACTCTCCATCAAGGCCTGGGTTGACAATTGTCTGGAGAGAATCTTGAAGTTTTCATTTATTCCAGGAACTAAAAATTAAATTCTGTCCCTTACCAATCAAgaataaattaagaaacattCATGCATTTTCCTAACATTTATGGTCTTTGAAAGTTCTTTCGAATTTCTCATAATTTTAGATGTGTAGGGTacaatattcataatttattacaGGCTTCAAAACACAATGAGTATGACAAACAATTGAATTACTTCTGAGATGGGCATATCAGTGACTTGAATAGTATTTATGTTGTTTGATGCCATGGTTTTTGCACATCACACACCACTTACTCACTGTACTTAGATTACATCTAGGATCACATGAACTTATGTATTTactcatttaaacatttaatttcacagatTCCATGTAACACGATTGCAGTGGAACAGTTCAGGGCTGGgttggtattattttaatgtgtatcaAAGGATTTCAACAGTCTGTCTTGGAATGTAGGAAGGCTGTTGAGGCAGTGTGAGGGCACGGGAACCAGAGATGGAAATTCTGCACAAAGTACAACGTGGGCAAAATGTAGGAGCAAATACAGAAGAAACTTACATTACCTTATATTTACTACTTTGGAATAATTCTAATGATgggtttctttagtttttttggttcTTGTGCTTAAGGGGAAACTAATGAGAAAAAATGGCTAGGAGTCTCAGTTAGCTTtcactggaaaaacaaagagGATGTATCCTTGAATTTCATTGACATAAACATGAAATAGCCTATTTATAccattttattcaaatgcagcacaacaaATTTGGTTGTTGTGTAGCAATGTCAATAAACATCTCTGAAATGTACAGACCTGCAGGGCAGACTAGTCtacagcagctgttttattccATGTAAATTAAAGTCATtttaagtttgttgttttttacaaaactgttgAAAATAGGAAGTGAGTTTACACTGATCAGGCAGGTTAGCTAGAATTTCACACATCAATGGTTGTCAGCTGGACTTGAAAGAATCTTTGCCAAAAGGAGGTTAAcacattgggggaaaaaataaacataacataaattGGACACTCTAAAGTAGCCATCaaggctgtttgtttgtttctattttgaGTCCATAAGCTTCCATACTGTCACCACATACATGTCACACTGTAACACCACAGCATACACATCAGGGCTAAAGCATCAGAGGAAGGACTTGATGCATTAAGTGCACTGAAAACCACAGTCTAACAGCCATCCAGGGACCTACATGAGTCTTATGCAAGGAGTCCTGGCCAACTGTAGGCCATGTATCCCCTCTCAGTGTCGAGCCACTCGGGAGACCATATTGTTCTTATTCATTGCATTTTCACAGTGGACATCAGATATGAGATTTGCTTATCATCTCTCGGCATATGCTggactggccatcgggcaattctggcaaTTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7487 True 4265 lncRNA 0.49 1 36161606 36165870

Neighbor

gene id symbol gene type direction distance location
AMCG00004165 NA coding upstream 3057 36134006 ~ 36158549 (+)
AMCG00004159 NA coding upstream 32646 36114501 ~ 36128960 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding upstream 87985 36067580 ~ 36073621 (+)
AMCG00004163 NA coding upstream 323896 35835773 ~ 35837710 (+)
AMCG00004157 NA coding upstream 477213 35642996 ~ 35684393 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 21623 36187493 ~ 36211948 (+)
AMCG00004166 NA coding downstream 71936 36237806 ~ 36252898 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding downstream 182703 36348573 ~ 36390512 (+)
AMCG00004173 msra,LOC106571446 coding downstream 289121 36454991 ~ 36469024 (+)
AMCG00004174 NA coding downstream 335956 36501826 ~ 36502116 (+)
G6067 NA non-coding upstream 341123 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 694951 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 705719 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 811579 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 854657 35301103 ~ 35306949 (+)
G6224 NA non-coding downstream 329970 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 360798 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 388034 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 390236 36556106 ~ 36557331 (+)
G6247 NA non-coding downstream 399700 36565570 ~ 36593153 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 116324 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 395426 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1291286 34852863 ~ 34870320 (+)
G5642 NA other upstream 3030420 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3759223 32400405 ~ 32402383 (+)
AMCG00004167 NA other downstream 95918 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 521760 36687630 ~ 36697885 (+)
G6314 NA other downstream 608131 36774001 ~ 36774523 (+)
G6328 NA other downstream 695677 36861547 ~ 36891746 (+)
G6369 NA other downstream 833487 36999357 ~ 37000158 (+)

Expression


Co-expression Network