G6200


Basic Information

Item Value
gene id G6200
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36402392 ~ 36403386 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7596
cgtCAAAGCTGGGAGTGGAAGACGTGCGTATAATGGTATGGACTAgagcagaggggtggggggaactGGATGGTCCCATTTCAATATAACAATTAAGTAAACCTACCAAAAGCATCACTATTTTTTCTCCCGAATaatctttgaaagaaaaaagagtgGATGAAGAGCGCACAAGGAGTACAGTGACTCAGATTAGGTTGGGTATGTGATAAATTGGGATGCTCTCCACCTCTTTCTCACAGCCCTGCTTGCATCAGACCTTTTTACATGACAGTCCCTGCTCTGGCTCCTGACTGTAAATTGCagctcttcttttttttccccttttgctttttgttatcCGTAGACTCCTGTTTGTATTACGCTTTTGatcaagactttttttttcccatttgcatttcctttaaaaGGCTCTGGTCCTTTGTAATCCTGTAGGTGGAAATGAATTGGTTTCTGTTGTCTGCATCAAGGCTTTTATAATATTGGGcatccattttccattttttagcTACAGATTGTAAGAATCTCTTTTGGTTAAAGGATTTTTATTCTACAGCATGGAAGCAGACCTCTGTTTTTTGTATAACTGGATACAGGTGgactgttgttatttttgatgaaaatgttatttggttGCAAAGACCCCTGGAATTATTCTGTAAGTGGCTCTGTGTGTTGTAAAtcattatttacagaaaaacaatgttgttgttgttgtaattgtaattatgaGTACCAttgttatttaaacaatttgaaTAGGACATAGGTGACATGGACGTTATCCTTTGTATTTGTGAAAGAGCATTAATGTTCATCGATAATTAAACGTTGACAACTGAATCTTGACATTTCGGGAGATTTGCTGTGTTGTGTATTCATTGGTCTTAAAATGAGACCCGTTTTGTGTTTACCTGCGGTGTAAGCACTTTGAATGGCATTTCTTTCTTGGTTTGTATATTATAGGGAAACCTTACACCAGTGCTGCCCTAGAC

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU7596 True 995 lncRNA 0.31 1 36402392 36403386

Neighbor

gene id symbol gene type direction distance location
AMCG00004171 NA coding downstream 57703 36340174 ~ 36344689 (-)
AMCG00004172 LOC106571444,LOC106607850 coding downstream 62914 36312921 ~ 36339478 (-)
AMCG00004168 dnajc5g,LOC103043078 coding downstream 102153 36288395 ~ 36300239 (-)
AMCG00004169 NA coding downstream 116984 36277958 ~ 36285408 (-)
AMCG00004162 slc30a3,slc30a2 coding downstream 229693 36167301 ~ 36172699 (-)
AMCG00004175 NA coding upstream 91715 36495101 ~ 36495451 (-)
AMCG00004177 rcan2,LOC108429336,LOC107675064,LOC107727622,LOC107602203 coding upstream 171866 36575252 ~ 36577556 (-)
AMCG00004185 NA coding upstream 242627 36646013 ~ 36663669 (-)
AMCG00004181 NA coding upstream 266929 36670315 ~ 36677129 (-)
AMCG00004183 NA coding upstream 274391 36677777 ~ 36681459 (-)
G6199 NA non-coding downstream 910 36400165 ~ 36401482 (-)
G6197 NA non-coding downstream 11886 36386362 ~ 36390506 (-)
G6136 NA non-coding downstream 131574 36269114 ~ 36270818 (-)
G6129 NA non-coding downstream 145203 36256989 ~ 36257189 (-)
G6103 NA non-coding downstream 238958 36161647 ~ 36163434 (-)
G6241 NA non-coding upstream 150521 36553907 ~ 36555108 (-)
G6243 NA non-coding upstream 152720 36556106 ~ 36557331 (-)
G6309 NA non-coding upstream 362186 36765572 ~ 36765809 (-)
G6326 NA non-coding upstream 377092 36780478 ~ 36780691 (-)
G6374 NA non-coding upstream 508852 36912238 ~ 36920856 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 987946 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 1438507 34954706 ~ 34963885 (-)
G5871 NA other downstream 1509779 34891901 ~ 34892613 (-)
G5801 NA other downstream 2266792 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 2370845 34015368 ~ 34031547 (-)
AMCG00004178 NA other upstream 92386 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 365662 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 380357 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 920624 37324010 ~ 37381953 (-)
G6441 NA other upstream 964599 37367985 ~ 37368822 (-)

Expression


Co-expression Network