G6315


Basic Information

Item Value
gene id G6315
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36774985 ~ 36776982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7742
TGGGTACACAAAAGACCAGGGGTCAGACCTTGGCCAGCCATTTTTATCGCTTTCTGTTCAGTGTACTGCCAGCAGTCATGATCCTCGTCAGACGTGCTTGTGCAGGCAGGAAGAACACCAGTCCTACCAGGCAGGTGATGCTGGGATCTGATGGGACTATGTCTTTCTGGAAAATTGTTTTCCTTGCTTGCTCATTTCAGCTGCCTGCATGACCAATGATGACCGTCTATGCTCAGGACAGTGTGTCCAGACCCTTATTTTCTGTACCAGTTAGGGGAAACAGCTGAGGCATGCAGACACTGTAAGAGCTGTGCCAGGGAATGGTGCCCAAGACAAAAATGCCCTTTTCTGTGATGCCCATTTCCTGTGTGTCAAGAAGATTGATTAGCCCACAATCTAGTTCTAATGTACCTTATAAATAACTACAGTCACACTGTCATTTTCTTAAACATttgttagtatttatttttgtaatctattttctttaaaatagaaAAGCCATGATTATTGTgctttcattacaaaatgttagttttttttcttcctgcagcACACAggagaaaatataaatgaagaCAGCTGCAGagtaaatatttcagttgtATCCGTGCAATGCTGTGACAGGCTGCCCTGGTCCTGTAGTTTCACATCATCTCTATTGTTGATACACATGGAAtctagattaattaattaaatttacttATATCCTGATTTTCCGTAGTCAGGgttaattcaaattattaaattacaaattacaattaaatcaaaattctCTTCAGTATCACTCTTAAAAAACTCATCAGTGTTGCGTTTAGTCTGGTCTCTCAAAGGGACAGGAGAACCCTTGCTGGCCATTAGACTGACCTCACCTCATGCAGTGTATGTGAtgtgaggaggaaaaaaaaagataacagtGCTAGGTTATGTGCTAATGTCTCTAATACAGCGCAATGCTTTGAAAGTATATTACTCGCTCCCGGACAGTTTCTTCATGAAGTTCTGGATATCCTGGGCCAGAAGCTCCGGCTCCTCGAAAGCAGCAAAATGCCCCCCCCGCTCCATGTAGTTGAAGGACACCAGATTCAGGTACTTCTGCTCGGCCCACAGCCGGGGCGTGTGCAGCAGCTCATTGGGGAAGCAGGCCATCGCTGTCGGCACCCGCACTGGCAGCTTTCATGTTTTCGAGTACCAATTCCTTTCCCAAGGTTTTCCTTGTAAAACCGCATTGATGAAATGATGCAGCCTGTCACCCAGTAAATCATCACGTTGGTCAAAAGGTCATCCAGGGAAAATTTCCTGCAAATGCAATTCATTAAGAGCgaataaaacacaaagagtGATGACATCAATAAAGTATCATTAACTAGGCTGATGTTCTTGACATGTGTGGCTCTATTTTAAGTTTTGAACAAATTGAAACTTGCCTTCTGCATAACAGCATAAATGCAATAAGCTACTTGCTTAggcaaagaacaaaacaagactGATGCATCTTCCACTATAAACTAAAATCAGGAATGAGTGGATATTGGATACCTTTCCAGTCCTCCATCTTCAAGGTTCCTGAACTGTGGGTCGGTCCAGGTGGAGAATTTCTCCAGGATGTAGGCGGCCAGCCCAACTGGAGAGTCATTCAGAGCCCGAC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7742 True 1645 lncRNA 0.43 2 36774985 36776982

Neighbor

gene id symbol gene type direction distance location
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding upstream 9779 36748856 ~ 36765206 (+)
AMCG00004180 NA coding upstream 28920 36742627 ~ 36746065 (+)
AMCG00004176 slc25a27,LOC107553473 coding upstream 105337 36663802 ~ 36669648 (+)
AMCG00004174 NA coding upstream 272869 36501826 ~ 36502116 (+)
AMCG00004173 msra,LOC106571446 coding upstream 305961 36454991 ~ 36469024 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 13452 36790434 ~ 36873869 (+)
AMCG00004192 NA coding downstream 107376 36884358 ~ 36904094 (+)
AMCG00004191 NA coding downstream 135664 36912646 ~ 36918990 (+)
AMCG00004190 NA coding downstream 159922 36936904 ~ 36939547 (+)
AMCG00004193 LOC104951820 coding downstream 421941 37198923 ~ 37231208 (+)
G6310 NA non-coding upstream 6962 36767737 ~ 36768023 (+)
G6277 NA non-coding upstream 67550 36705670 ~ 36707435 (+)
G6276 NA non-coding upstream 70226 36704508 ~ 36704759 (+)
G6275 NA non-coding upstream 72017 36702705 ~ 36702968 (+)
G6274 NA non-coding upstream 72536 36702213 ~ 36702449 (+)
G6316 NA non-coding downstream 147 36777129 ~ 36777523 (+)
G6317 NA non-coding downstream 952 36777934 ~ 36778165 (+)
G6318 NA non-coding downstream 1386 36778368 ~ 36778577 (+)
G6319 NA non-coding downstream 1898 36778880 ~ 36779150 (+)
G6320 NA non-coding downstream 3579 36780561 ~ 36781417 (+)
G6314 NA other upstream 462 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 77100 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 496751 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 729703 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 1008805 35752450 ~ 35766180 (+)
G6328 NA other downstream 84565 36861547 ~ 36891746 (+)
G6369 NA other downstream 222375 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1055641 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 3549428 40326410 ~ 40341235 (+)
G7094 NA other downstream 4682594 41459576 ~ 41507231 (+)

Expression


Co-expression Network