G6445 (tnfrsf21,LOC102783898)


Basic Information

Item Value
gene id G6445
gene name tnfrsf21,LOC102783898
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37412689 ~ 37416547 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7897
GACAAAAGTTGGAACTTTAATTGGTTGATGTACATGTTACAATAATTGTACAATTATCATATACAGGTGTTAAGTATTAAAACAGCCACCAGAATATATGGTGCAAACATCAGCAATTCTTGGTAAGAAACACTTCAATAGATTAGTAACAGGCTAGAAGGCAGATCTCCATCATTCTTCTGTGAATTCCATAGAAATCCAGTTTCAGAAGCAATTCGTTCGGGCCGTTGAGGCTGGCTTAATAACACCATGAATAACTTTCTCAGACTGTTACATTAAACCAGCACCACCAGGGTATTTCAAGTCTAGCACCAGGGTAGCTTGATATATTACTGGCCTTACAGATTAAACAGACACGGTGAATCCTCAGTCACTGTCCGGCAAAAtcttctttgtgttttgaataTGAAGTATGTTTTGGTGCCTAAGGTAGGGTCTATCAGGTGAgcactattttaaaaataaagtaactaAAAACACAAGTGTGCCATCTAATTCAAGTAGTATATGTTGAATGCAAACCCTCTGCAATGTTACATTAGATTACTAACCCAAGCAGTGATCATCTCAAATGCCCATTACATGATCATACACATTGCtgatgtaaaacataaaaactgcagtaataaaaaaatgcattacaaaaagaACAGACATGACATTAGCAAACAGCACTTCAAAAAACGTAGGCCATTGAAGCAGGTTTGGCTGACTGccatttttataaaattagtgcataaattatattacatatcaTTAGTGTTTAACGGTAACATACATCATTTGTAAATTCTGACGTTTCCCTATGAACAGTAATACTAACAAGAAGCTCCAAAACATAAGAGAACACCTTTTCAAAGCTACATTTACGCAAGTGcaagatgtattttaatgtgcacGGTGGGAAGCAACTGTTACAGACAAAACTGTCTGGCCTCAGCGCATGTCACATGTTCCAGGCTTTACTGTACATGCAGcattattctctctgcttctcaCGGCCCTTGCCAGCTTGTGATACATGAAGTAAATGCAATCCCTGGCCATGTGACTACAGGAGGTCAGGCAGGTGGCTGTAAACGGAGTCCAGCAGCTTCTGGCTGGCCTCCTGGCTTTTGACACCAGCAATCTCAAAGAGTTTATCCAGCTTGTCCTCAGCTGAGGGAGTCTCCTCGATTACGTGCAGCTCCTCAGGGTTTAAAATGTGCAACATGTCGTCGAAGATGGGCTGTAGGTCACATGGGTCCAGGCGGACTTGGCGCAGTACAGTGTCCTTTTTTTCCTTTGGTAATAAAAGAGCCTGTTCTGCTGAGGGCTGAGTTGTTGCTGGAGGTGGAATCACAGCGCAGAAGTGGTTCTGACTCGTCTGGGAAGAATCCCTTGGTCCTATCCACTGGGGAGTGCTCCACGATGACTCCTGGGGACTCTAAAGGCTTGTGGGTAGGGCTGAGGCATTGAGTTACATTCACAGAGGTCATCAGCTGGTTCAGatcaaactggaaaacaaacaaacaaaacaaagaacagaggggaaaacaagtgaatacaatagcTA
>TU7900
GACAAAAGTTGGAACTTTAATTGGTTGATGTACATGTTACAATAATTGTACAATTATCATATACAGGTGTTAAGTATTAAAACAGCCACCAGAATATATGGTGCAAACATCAGCAATTCTTGGTAAGAAACACTTCAATAGATTAGTAACAGGCTAGAAGGCAGATCTCCATCATTCTTCTGTGAATTCCATAGAAATCCAGTTTCAGAAGCAATTCGTTCGGGCCGTTGAGGCTGGCTTAATAACACCATGAATAACTTTCTCAGACTGTTACATTAAACCAGCACCACCAGGGTATTTCAAGTCTAGCACCAGGGTAGCTTGATATATTACTGGCCTTACAGATTAAACAGACACGGTGAATCCTCAGTCACTGTCCGGCAAAAtcttctttgtgttttgaataTGAAGTATGTTTTGGTGCCTAAGGTAGGGTCTATCAGGTGAgcactattttaaaaataaagtaactaAAAACACAAGTGTGCCATCTAATTCAAGTAGTATATGTTGAATGCAAACCCTCTGCAATGTTACATTAGATTACTAACCCAAGCAGTGATCATCTCAAATGCCCATTACATGATCATACACATTGCtgatgtaaaacataaaaactgcagtaataaaaaaatgcattacaaaaagaACAGACATGACATTAGCAAACAGCACTTCAAAAAACGTAGGCCATTGAAGCAGGTTTGGCTGACTGccatttttataaaattagtgcataaattatattacatatcaTTAGTGTTTAACGGTAACATACATCATTTGTAAATTCTGACGTTTCCCTATGAACAGTAATACTAACAAGAAGCTCCAAAACATAAGAGAACACCTTTTCAAAGCTACATTTACGCAAGTGcaagatgtattttaatgtgcacGGTGGGAAGCAACTGTTACAGACAAAACTGTCTGGCCTCAGCGCATGTCACATGTTCCAGGCTTTACTGTACATGCAGcattattctctctgcttctcaCGGCCCTTGCCAGCTTGTGATACATGAAGTAAATGCAATCCCTGGCCATGTGACTACAGGAGGTCAGGCAGGTGGCTGTAAACGGAGTCCAGCAGCTTCTGGCTGGCCTCCTGGCTTTTGACACCAGCAATCTCAAAGAGTTTATCCAGCTTGTCCTCAGCTGAGGGAGTCTCCTCGATTACGTGCAGCTCCTCAGGGTTTAAAATGTGCAACATGTCGTCGAAGATGGGCTGTAGGTCACATGGGTCCAGGCGGACTTGGCGCAGTACAGTGTCCTTTTTTTCTTGGTAATAAAAGAGCCTGTTCTGCTGAGGGCTGAGTTGTTGCTGGAGGTGGAATCACAGCGCAGAAGTGGTTCTGACTCGTCTGGGAAGAATCCCTTGGTCCTATCCACTGGGGAGTGCTCCACGATGACTCCTGGGGACTCTAAAGGCTTGTGGGTAGGGCTGAGGCATTGAGTTACATTCACAGAGGTCATCAGCTGGTTCAGatcaaactggaaaacaaacaaacaaaacaaagaacagaggggaaaacaagtgaatacaatagcTA

Function

symbol description
tnfrsf21 Acts upstream of or within establishment of endothelial blood-brain barrier and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; forerunner cell group; and pronephric duct. Orthologous to human TNFRSF21 (TNF receptor superfamily member 21).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7897 True 1555 lncRNA 0.49 2 37412689 37416547
TU7900 False 1553 lncRNA 0.41 2 37412689 37416547

Neighbor

gene id symbol gene type direction distance location
AMCG00004204 NA coding downstream 124354 37278386 ~ 37288335 (-)
AMCG00004196 cnih3,LOC107553421,LOC106607867,LOC107601529,LOC107732540 coding downstream 359916 37050001 ~ 37052773 (-)
AMCG00004195 NA coding downstream 406738 36971391 ~ 37005951 (-)
AMCG00004194 NA coding downstream 451987 36921065 ~ 36960702 (-)
AMCG00004184 LOC102789059 coding downstream 691203 36697723 ~ 36721486 (-)
AMCG00004202 NA coding upstream 70410 37486957 ~ 37512998 (-)
AMCG00004201 NA coding upstream 108232 37524779 ~ 37528763 (-)
AMCG00004200 NA coding upstream 129828 37546375 ~ 37555523 (-)
AMCG00004207 vsnl1,LOC105894450,LOC103457788,LOC103023468,LOC103027217,LOC108440966 coding upstream 191474 37608021 ~ 37632390 (-)
AMCG00004211 NA coding upstream 545730 37962277 ~ 37978111 (-)
G6437 NA non-coding downstream 94540 37315636 ~ 37318149 (-)
G6384 NA non-coding downstream 384445 37028028 ~ 37028244 (-)
G6374 NA non-coding downstream 491833 36912238 ~ 36920856 (-)
G6326 NA non-coding downstream 631998 36780478 ~ 36780691 (-)
G6309 NA non-coding downstream 646880 36765572 ~ 36765809 (-)
G6462 NA non-coding upstream 81651 37498198 ~ 37498446 (-)
G6491 sf3b6,SF3B6,pm14 non-coding upstream 150784 37567331 ~ 37569793 (-)
G6574 NA non-coding upstream 838462 38255009 ~ 38255371 (-)
G6588 NA non-coding upstream 1049866 38466413 ~ 38466664 (-)
G6599 NA non-coding upstream 1199672 38616219 ~ 38616465 (-)
AMCG00004203 NA other downstream 30736 37324010 ~ 37381953 (-)
G6441 NA other downstream 43867 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 625567 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 633627 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 871848 36495772 ~ 36540841 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 2425388 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 4648442 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 4960179 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 5986406 43402953 ~ 43450255 (-)
G7608 NA other upstream 7104367 44520914 ~ 44522213 (-)

Expression


Co-expression Network