G6491 (sf3b6,SF3B6,pm14)


Basic Information

Item Value
gene id G6491
gene name sf3b6,SF3B6,pm14
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37567331 ~ 37569793 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7958
taaaaacaaatcagtattTATTAACAAGGATACACTGCTTAAAGTCCACAGCAGTGCTGTTTTTCAGTGAAAACTGGACATTTGAAAAGATTATAAAAGCTGCAAAAGgaacatatgttttattttttttcaatcttaACAGACAACAAGACATATTGTAAAGTGGACATAATAAATCCATTACTTTATCACAAATCATACAATTATACATGAGaccttgtaaaaataaaataaaaaggctatTGTGGCCTTTTGTCATATTTATGATACAGGGAAAACAATTCCATATgcaatgagggaaaaaataaaacaaaagagttCTTCAAAGTTTGAATCAGTCCATGGGttgtttattttggtggatCTGTGTTGATGCCATATTTTTCTTTGAGAAGTTTCAGCTGTTCCTCTTTCTTCTTTGTATCCATTTTCTGGAAAGCTGTTTGCATTGTAGTACAAGACAACCAGATATCTGTTGCAGACATTAAATCCAGATAAGTGATCACAAGCATTCTTGGCATCAAAGATGTCTTCATAGACAACATAAGCGGTTCCTCTGGTTTCTGGAGTGTTCCCTctGATTTGCCGGATTGGTCCATACTTTCCAAAGATATCATACATTTCTTCTGCAGTAATTTTGTAGGGCAGATTCCTAATATACAGGATTCGATTTACTTCTGGTGGTAAACGAATTAGCTCTTTTTGCAGCTTGCATAGCCATGATTGCGCCTTCTTGTTGAAAGAAATATCTTTAAGAACGAAAACAACACAGGACGCACACAAACAGCGATGCAAAATGGCTATCTTAAGGAAGTATGATTCTTGTTGGCCGCAGGCTGATGACG

Function

symbol description
sf3b6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human SF3B6 (splicing factor 3b subunit 6).

NR:

description
splicing factor 3B subunit 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7958 True 845 lncRNA 0.35 4 37567331 37569793

Neighbor

gene id symbol gene type direction distance location
AMCG00004200 NA coding downstream 11808 37546375 ~ 37555523 (-)
AMCG00004201 NA coding downstream 38568 37524779 ~ 37528763 (-)
AMCG00004202 NA coding downstream 54333 37486957 ~ 37512998 (-)
AMCG00004204 NA coding downstream 278996 37278386 ~ 37288335 (-)
AMCG00004196 cnih3,LOC107553421,LOC106607867,LOC107601529,LOC107732540 coding downstream 514558 37050001 ~ 37052773 (-)
AMCG00004207 vsnl1,LOC105894450,LOC103457788,LOC103023468,LOC103027217,LOC108440966 coding upstream 38228 37608021 ~ 37632390 (-)
AMCG00004211 NA coding upstream 392484 37962277 ~ 37978111 (-)
AMCG00004212 ddx1,LOC107726609,LOC107726454 coding upstream 507688 38077481 ~ 38088504 (-)
AMCG00004213 NA coding upstream 764480 38334273 ~ 38479940 (-)
AMCG00004217 trib2 coding upstream 1011961 38581754 ~ 38588893 (-)
G6462 NA non-coding downstream 68885 37498198 ~ 37498446 (-)
G6445 tnfrsf21,LOC102783898 non-coding downstream 150784 37412689 ~ 37416547 (-)
G6437 NA non-coding downstream 249182 37315636 ~ 37318149 (-)
G6384 NA non-coding downstream 539087 37028028 ~ 37028244 (-)
G6374 NA non-coding downstream 646475 36912238 ~ 36920856 (-)
G6574 NA non-coding upstream 685216 38255009 ~ 38255371 (-)
G6588 NA non-coding upstream 896620 38466413 ~ 38466664 (-)
G6599 NA non-coding upstream 1046426 38616219 ~ 38616465 (-)
G6668 NA non-coding upstream 1356928 38926721 ~ 38927022 (-)
G6762 NA non-coding upstream 2025148 39594941 ~ 39596639 (-)
AMCG00004203 NA other downstream 185378 37324010 ~ 37381953 (-)
G6441 NA other downstream 198509 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 780209 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 788269 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 1026490 36495772 ~ 36540841 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 2272142 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 4495196 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 4806933 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 5833160 43402953 ~ 43450255 (-)
G7608 NA other upstream 6951121 44520914 ~ 44522213 (-)

Expression


Co-expression Network