G6617


Basic Information

Item Value
gene id G6617
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38749914 ~ 38756252 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU8105
GTCCAGAACAAAAGGTAGATGGTATAGCTCCGTAAAAAGGAGTCACCTGAGTAAAGACAGAAAATGCAAACCTACATTCTCTAACTGAAAGATTCCAGCAATTGTTCAGGTTGTATGTGAATGACCTCCCCAATTTGAGTACAGTTAACTAATATTTCACGAgagattttcattaaaaattgtgaaaaaagaaaagaaaaaaacacgtTAGTTCCACAGTTTGGGTAAGTTAATACTAacctttgcatttagttcatcaACAATAAAATGGCACAGTGCAGCCTTAAAGAAATACTCTTTCGCACTGTATTTCAGTAAGGGGTTATCCATAGTGTTAGTGCCAACCTGCAGagacggaaaaaaaaaaaaaatgtaaatcggTTTTGCTTTCAAATAAGCAAAGAAATTACACAACTACTTTTCAAAGCACACAAACCTGCTCATAAATTTCAGTTGCCTTCTGATATTGTTCTAGTTGTGCGCTATACGAAGCTACCTTCAGTAGACACTTGTTGGCAGagctaaataataattaaaaaaacattgttaaaagcAGATTTCACTTAAATTCtataatttaaaagcattttcaaagtTAGATGTGTGATAAGTGTGTAgttttctttcaataaaaacttgCACTTACCTTAGcagatatacattttgaaggaaGCTAAAAGTGTCATTTCTGCTCTACAAATGATGCAACATTAACACATAGACGAGGGTTAGACTATGCAACAGATTAATGTTCCCTTAGTCTTACCTGTTAGACTCTTCCCCTTTGTAGTAATCTGCTGCCTGTTCATAGTGTGCAATAGCCTaaagtgagagaggagagaagagaagaattACAAGCTGATAAATGTTGCTTCCACAAGACTGATTGTGGATACTAATTATTCccaaaataaaccttttcattggatatagttttacattgtatatttagtattaaatattgaaatgattaaccttatttaatttctattcCACATTGAAAGTAACTCTAATAAAAGTACCTTGTACTTTCACTCACGACTGGCTTCCCCGTGTTTAAAACGATCCCCCAGGGTGTTAAAATCCAGCACAATCTATGCATTGGGCAGAGGTTTTGACATATTGctgcaaatacaatttatttgaaacacTGGAGAAACACGGGGGAAAAATTATATTTCGGGAGCCTCCATTGAGATAAGAAGAGTTCACAGTTGTGAATACATACCTTTTCAATATCCACCAGCTCAGACTCATAAACCTCGGCAATTGTGATGTGGTGTTTAGCAGCAATAGTGAATCTGCCCTGTAAGACAGATGGATTGTTCCATGAATGGACTTATAATCAAAATCTCAACCCAAGAACCACAGAACGCATCCAATAATATACAGACAGATGTTGCTATACTTTTGGTCTGAGTTTCTTACcatatctgtgtatatatcGATGGCTGCATTTAAGCAGTTGATAGCCTCTATTGCGTGCATTTggaaaaaggaaggaaaagtcaATGCAGAGATCAAACCACAGGTAAGGTATAAACCTgctaatttgaaaacaacaaacctgTACTCATTAGcaacttaatgttttattagatGCTTCTTTCTTCCACTAAGAAATATAACCGCTATCAATTACatgtctgtagtttgctattaggaggctattcagtttttatttaatccaggaAAAACTTTACTGTTAGCCGACTGATtctgtcaatattttttttaaactgctatTACTAGTTAAAAATATGCAGGAAAATTAATTCTGGTGATTTAGAGATTTCCCCTTACAACttgtggggggtggggcagggggaaaaaaaaaattactacTTTCACTTTCCCACCTTGTGGATCTGCCTTCTTGTAAGCATTGCCGGCATCTACGAAGCTGGTGGCAGAGTCGTGCTTGCTCTGGAGCTGCATGTGCAGCTTGGCAGCCTGACAGAAGGCACTTCCTGCAGCTGGAGAGAAAAATACTCGAATGGGAAAGCTACAGAGTCTCCTTTTCCATAGAGATTTAATTCCAAACAAGCCCTCTATTATAACATTGAACCAGTTATGGCTCACTCTGGTCAAGATTAAATATCAACATGCTTGGCAGTCATTTTTACAAggtaaataaaaagcaaagcagaTTTTCTGATAGGTGTGTTTCACAAGACAGCAGTGCTTGAAGGGTCACCAAGGAGCATGGTGgagaacacaaaaatacattttacattttagacaaTTTACCATTCCAGTTCTTGGCCATCTTGAACATGTTAGCTGCCCTTGCATACATCTCACATGCTTCTTCCACTTTAGAGTTGCccCCAAACATGCCGCCCAGGAACGAGTGGGAGGATTTCACTTTCTTATCCGCTTCAGCCATGAGTTGAATGGCTTCTTTTTCCTTCCCGGAGttgtccatttttattttggtatttttctaAAAGCTACACTTTTCAAATCCGATCTCTTCCACCTCCCGTTGTAGCAGATTTATGATCAAGGACTGTATTTACTACCAGCAGCGCGTCTACATCCTCCGCCGAAAGGCTTCACGGGATATCTAGTTTATTTCTCTTAGGCGAAGCACAAAAAAGGTACAAGGAAACTACACATCCCAAAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU8105 True 2629 lncRNA 0.40 2 38749914 38756252

Neighbor

gene id symbol gene type direction distance location
AMCG00004218 NA coding upstream 6348 38731508 ~ 38743566 (+)
AMCG00004214 NA coding upstream 523103 38225556 ~ 38226811 (+)
AMCG00004216 NA coding upstream 529819 38213382 ~ 38220095 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding upstream 563777 38088863 ~ 38186137 (+)
AMCG00004208 NA coding upstream 1142692 37570803 ~ 37607222 (+)
AMCG00004222 NA coding downstream 69569 38825821 ~ 38833968 (+)
AMCG00004223 mcm8,LOC107738559 coding downstream 83764 38840016 ~ 38850011 (+)
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding downstream 94537 38850789 ~ 38855317 (+)
AMCG00004225 NA coding downstream 197885 38954137 ~ 38963635 (+)
AMCG00004228 NA coding downstream 493210 39249462 ~ 39293233 (+)
G6598 NA non-coding upstream 133450 38616244 ~ 38616464 (+)
G6586 NA non-coding upstream 283271 38466396 ~ 38466643 (+)
G6585 NA non-coding upstream 331138 38416598 ~ 38418776 (+)
G6573 NA non-coding upstream 494431 38255229 ~ 38255483 (+)
G6471 NA non-coding upstream 1233416 37514882 ~ 37516498 (+)
G6627 NA non-coding downstream 19701 38775953 ~ 38777500 (+)
G6653 NA non-coding downstream 101866 38858118 ~ 38859005 (+)
G6667 NA non-coding downstream 170486 38926738 ~ 38927030 (+)
G6676 NA non-coding downstream 210426 38966678 ~ 38966890 (+)
G6684 NA non-coding downstream 366295 39122547 ~ 39148294 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 902194 37832623 ~ 37847720 (+)
G6369 NA other upstream 1749756 36999357 ~ 37000158 (+)
G6328 NA other upstream 1858168 36861547 ~ 36891746 (+)
G6314 NA other upstream 1975391 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2052029 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1570158 40326410 ~ 40341235 (+)
G7094 NA other downstream 2703324 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3454178 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3932527 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5861933 44618185 ~ 44640732 (+)

Expression


Co-expression Network