G6627


Basic Information

Item Value
gene id G6627
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38775953 ~ 38777500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU8115
CAAGTTTTTAACAGCTGCACAACAATAGCGTACCTCTGACTTTTCCAAGGGACTGTCTGGAGTTTCTACCGATAATAGGCAGAGTGACGATTCCCGTGTCTTTGCCACTTTCCGCAAATGTGGAAGACAGCAGGCAGGCAGTGCCCACGAACCCAGAGTGCATGTCCCCTTGGACCACTTTGTCACTCAAATCCTCCTAGAAAGTCACAAAGATAAACCAAATGTTATATCTGTCAACTTGTAGATAAGCAGATAAATGAAATGCAGGCAAGCAGCATaactccacaaaaaaaaaaaaattgtgaagtACAGTATATGTAAAGTTCCAACGCTTAATTTTGCAACTGAACAATGCCTTCTATGCACACTGGGAACTCACGTATAtcgaagaataaataaaatgcaccaGTACACATGCTCGTGCACATCTGTGTGCGTGTCATCTCCAACCTCTTCAATTCAGTGGTGGATGAACTTCTCTCCATCTGGCCACACAGACCCTGGAGTTACCTGCACTACACTCAAACCAAACAGGTATAGGTTCGCtAAAAAACTCAAAAGTTAGTTCCAGGTTGTCTGGGTCCATTGTGTGAATGATGTACTCTGTCCATTGGTTTGGCTCCAGTGCATAGCCACATTCTGGCTGAGAATGGCGTGATTTATACCCATTGCTACTGATCAAACTGATCTCAAGCGTGGTTGTCATTTTACTCCAGGTGGTAGGGTGCTCTTCGTCATCTTCCCCTTCTTCCTCATAGCCTTCCAGTGTCAGCTTCAGTCTAAACCCAATTTAAAAAGGAACCGGTGCTCAGTGTGCAAACTACGATTAGGATTTAATCAATCCAATAgtgatttaatcaaaacttgTATCAATcagattataaaaataactCCTAACCTCaagatggaaataaatacatgcacattttGTTCTCTGATCTCCTTGCAGAATGGGATTCAAAACACAGTGGTATTCAAGTTGCATGTAAATGCAAAGTGTAAAGATGAACCACAGCGATGTTGCTGCATGACGCATGCTTAGCTTGAaccctttcagtttttttgtaatttgccaCTTCCTGGAAACTCCACAGTAAATATACACAACCTGCACAGAAAACGTTTTAATGACATTCAAGGGAAatgttagttgttgttttttccacatgAGGAAACACTAGCTAAGAGTTTGGATTGATCAGCTTACCTGAATTGTGACTTTTTAAACTTCTTTTTTGTTATAGACACTGCTGGCTTCTGAGAGTAATGAAGGCGAAGGCGAATTTCAGTCTGGCATGTCAGCCATCCAGAATCTACACACTCGGTGTCAt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8115 True 1331 lncRNA 0.38 2 38775953 38777500

Neighbor

gene id symbol gene type direction distance location
AMCG00004218 NA coding upstream 32387 38731508 ~ 38743566 (+)
AMCG00004214 NA coding upstream 549142 38225556 ~ 38226811 (+)
AMCG00004216 NA coding upstream 555858 38213382 ~ 38220095 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding upstream 589816 38088863 ~ 38186137 (+)
AMCG00004208 NA coding upstream 1168731 37570803 ~ 37607222 (+)
AMCG00004222 NA coding downstream 48321 38825821 ~ 38833968 (+)
AMCG00004223 mcm8,LOC107738559 coding downstream 62516 38840016 ~ 38850011 (+)
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding downstream 73289 38850789 ~ 38855317 (+)
AMCG00004225 NA coding downstream 176637 38954137 ~ 38963635 (+)
AMCG00004228 NA coding downstream 471962 39249462 ~ 39293233 (+)
G6617 NA non-coding upstream 19701 38749914 ~ 38756252 (+)
G6598 NA non-coding upstream 159489 38616244 ~ 38616464 (+)
G6586 NA non-coding upstream 309310 38466396 ~ 38466643 (+)
G6585 NA non-coding upstream 357177 38416598 ~ 38418776 (+)
G6573 NA non-coding upstream 520470 38255229 ~ 38255483 (+)
G6653 NA non-coding downstream 80618 38858118 ~ 38859005 (+)
G6667 NA non-coding downstream 149238 38926738 ~ 38927030 (+)
G6676 NA non-coding downstream 189178 38966678 ~ 38966890 (+)
G6684 NA non-coding downstream 345047 39122547 ~ 39148294 (+)
G6769 NA non-coding downstream 990884 39768384 ~ 39768607 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 928233 37832623 ~ 37847720 (+)
G6369 NA other upstream 1775795 36999357 ~ 37000158 (+)
G6328 NA other upstream 1884207 36861547 ~ 36891746 (+)
G6314 NA other upstream 2001430 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2078068 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1548910 40326410 ~ 40341235 (+)
G7094 NA other downstream 2682076 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3432930 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3911279 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5840685 44618185 ~ 44640732 (+)

Expression


Co-expression Network