G7882 (LOC107575789)


Basic Information

Item Value
gene id G7882
gene name LOC107575789
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46468125 ~ 46468434 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU9698
cctgtattaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctaaacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgaccacagttggtgtgattattcgcaaatggaagaaacacaaagtaactgtcagtctctctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagccaaGAACTACA

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9698 True 310 TUCP 0.36 1 46468125 46468434

Neighbor

gene id symbol gene type direction distance location
AMCG00004392 NA coding downstream 132111 46319298 ~ 46336014 (-)
AMCG00004391 v26bl,LOC108423787,LOC107751386,LOC107588734,LOC107691644,LOC105024202 coding downstream 167759 46289169 ~ 46300366 (-)
AMCG00004393 acad8 coding downstream 183262 46275576 ~ 46284863 (-)
AMCG00004394 fez1,LOC107751387,LOC107691643 coding downstream 198707 46254823 ~ 46269418 (-)
AMCG00004386 robo3,LOC106603666 coding downstream 382657 46062808 ~ 46085468 (-)
AMCG00004402 cadm1,LOC106603642 coding upstream 529574 46998008 ~ 47002451 (-)
AMCG00004410 NA coding upstream 1930383 48398817 ~ 48400277 (-)
AMCG00004411 NA coding upstream 1931892 48400326 ~ 48401535 (-)
AMCG00004409 NA coding upstream 1935746 48404180 ~ 48425709 (-)
AMCG00004413 NA coding upstream 2114705 48583139 ~ 48584401 (-)
G7877 NA non-coding downstream 149859 46318025 ~ 46318266 (-)
G7876 NA non-coding downstream 151280 46316602 ~ 46316845 (-)
G7875 NA non-coding downstream 151581 46316168 ~ 46316544 (-)
G7874 NA non-coding downstream 152456 46315357 ~ 46315669 (-)
G7873 NA non-coding downstream 152939 46314679 ~ 46315186 (-)
G7910 NA non-coding upstream 248889 46717323 ~ 46718779 (-)
G7912 NA non-coding upstream 250437 46718871 ~ 46723090 (-)
G7935 NA non-coding upstream 421213 46889647 ~ 46890133 (-)
G7936 sc5d non-coding upstream 422508 46890942 ~ 46893030 (-)
G7975 NA non-coding upstream 1179737 47648171 ~ 47648582 (-)
G7868 NA other downstream 160806 46306926 ~ 46307319 (-)
AMCG00004372 LOC108423781,LOC105921217 other downstream 1756074 44623190 ~ 44712051 (-)
AMCG00004364 NA other downstream 1906550 44540163 ~ 44561575 (-)
G7608 NA other downstream 1945912 44520914 ~ 44522213 (-)
AMCG00004336 NA other downstream 3017870 43402953 ~ 43450255 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other upstream 414858 46883292 ~ 46887754 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other upstream 579690 47048124 ~ 47306589 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other upstream 1994747 48463181 ~ 48480715 (-)
AMCG00004420 NA other upstream 2471590 48940024 ~ 48985311 (-)
AMCG00004429 NA other upstream 2942773 49411207 ~ 49425182 (-)

Expression


Co-expression Network