G7936 (sc5d)


Basic Information

Item Value
gene id G7936
gene name sc5d
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46890942 ~ 46893030 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU9767
AACCGGTGAGGTTGAAATTTAATTACTGGGCACAGCACTATCCCAAAGCATGTGTTTCTTccaattacatgtatatttataaataattccaCCTTAAATTATACTAGACGCATTTGTTATCTCAAATGGCgatttaatacataatttacatctTATTGCTTAGTTTTCACAAGGATGTCATTAAATATCTGAATGCTTTctcaaaacattttccattaagtttacattctttaaatatctgaatgctttctcaaaacattttccattaagtTTACATTCTTGAACATTCAAATTTAACAGTTACATcagatggagaaagagaaaaaaaaaaagtgtaaagaCTAAGTGTCATGCTGGCGTACActcaaaaagacacaaattattCTTTTCCTTGGACTCCCATCTGGTACCAGACACCCTGGAGAGGCACAGGCCACCTGTTCTAAATTACTCCAACatttgttcaatttaattttccttaaaaaaaatcacaatctgACAATGACATGAAAACAATGAAACCTAAACAATCTGGAGACCATTTTGGGCATTTCCCTCATGCTAGGAATGATATCAATGTTTggaagattattattactactattttaaaaatgctgaagacataaaaaaatatatacacagtagCTGTAATTGCATCATCCCTTTCTTTATTACATAAAATCACCTCCAACCTTCAAAAAGGCTTATAATCAATTCCCTCAGAACTTTAATTAGCGTCACATAGATCTGGTTCCACCAACCGTGAAAGCCTGACAGTTTAAAGTCCTGCCCCAGAGTTCATCTCGATCTGCTGTCCAAGCTATtgtgctacagtactgtgcactTTGATTTTCAATACAGGTCTCTCCCGTTTTTGAGACCATGCTCGGCTCCAGGTAGCACCACTCAAAAACCAATGAATCAAGCCTCACCATTTCTGACTCCTGTGAGAaatgcaccccccacccccaccacatACTTCTCACATGAAACACCTTATGATTCTTGATGAGAATactcctaattattattattattattatgactattacATTTCTCTTGCAGGAAGTTAAAGTTAGACTTATCTGAGGCCCAATGTCAAATGGAAAGCTTTCACTTAAATGTAATGCTTATGGACTGACAGAACACAAAGGTGCTTTTCAATCAGGTTTTGGGAGTGAAAGAGCAAACacagaggaggaaaacaatTCTAAAATATTGGCCACCGCATTTTggcaatttaaagaaaatgttaagaCGTAACTGTGTGGCGATAATTTTCACTTCTGTTTCGAGCGGAGACATTTGCAGACAATTCATGATTCTGTACCATTGATTTTTAGGTTTATGCGTGTTATCTCAAGCACCCGCTGTGTCCAGAACCTCGTGATCTGCTCCAGTTAACAGGACAGGCAGCACAGGGAACAGACAGCAGACACAGGGACAATCAAGCACGGATGGATTGTTGGCTGAAGGAGGAATTGTCTGCGGATTAATTAATGCACTAATACCACCATGGTCCATTGTGGGGGAaggagagatttaaaaaaaggcaacaaaattaaacaaggcAAGGGGGACAGCCTGTAATTACTGCCTCGCATTCATGTGATAAAGTAAATTAAGCTGTTGGTACTATTCGCTTTTGTAGGCTTTGCTGCAATCAGATGCCCCATTCGTGTGACCGTTGCTGGCAGTGCCCAGTCTGCTGCCTCCCTCCTTCAGTTTCCTGATACAATCGTGAGGTCCCTTTCCTTGGAAGGAGGACGGGTGTCTGTAGGACCTGCCGACTCGGTCCCAGAGAGTGAAGTACTGGCCGTAGTTGTAGTCAAAGAAGAGGTGGTGGTCAGTGTGGTGCGCAGAGCCATTGATCACAGGCTGAAGGAGGCTGGGGACCCGGTAGTCCCCGTCGTGAATGGACACTGTCCAGACGTTGACAAACACGTACAGCCCCAGGTAGACCACCTTGTGCAAGGGGAATAAGAAGGGGTATACGTGGTAGGGTAGGCCCTGCAGGAACCCGTCCACGGGGTGAAAGGCATGGCTGGCGAAAGGAGTGGGGATCTTCCAGATGTGGTGAGGTTTGTGG

Function

symbol description
sc5d Predicted to enable C-5 sterol desaturase activity. Acts upstream of or within response to yeast. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human SC5D (sterol-C5-desaturase).

NR:

description
PREDICTED: lipoyl synthase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9767 True 2089 lncRNA 0.42 1 46890942 46893030

Neighbor

gene id symbol gene type direction distance location
AMCG00004392 NA coding downstream 554928 46319298 ~ 46336014 (-)
AMCG00004391 v26bl,LOC108423787,LOC107751386,LOC107588734,LOC107691644,LOC105024202 coding downstream 590576 46289169 ~ 46300366 (-)
AMCG00004393 acad8 coding downstream 606079 46275576 ~ 46284863 (-)
AMCG00004394 fez1,LOC107751387,LOC107691643 coding downstream 621524 46254823 ~ 46269418 (-)
AMCG00004386 robo3,LOC106603666 coding downstream 805474 46062808 ~ 46085468 (-)
AMCG00004402 cadm1,LOC106603642 coding upstream 104978 46998008 ~ 47002451 (-)
AMCG00004410 NA coding upstream 1505787 48398817 ~ 48400277 (-)
AMCG00004411 NA coding upstream 1507296 48400326 ~ 48401535 (-)
AMCG00004409 NA coding upstream 1511150 48404180 ~ 48425709 (-)
AMCG00004413 NA coding upstream 1690109 48583139 ~ 48584401 (-)
G7935 NA non-coding downstream 809 46889647 ~ 46890133 (-)
G7912 NA non-coding downstream 167852 46718871 ~ 46723090 (-)
G7910 NA non-coding downstream 172163 46717323 ~ 46718779 (-)
G7877 NA non-coding downstream 572676 46318025 ~ 46318266 (-)
G7876 NA non-coding downstream 574097 46316602 ~ 46316845 (-)
G7975 NA non-coding upstream 755141 47648171 ~ 47648582 (-)
G7978 NA non-coding upstream 792601 47685631 ~ 47685874 (-)
G7979 NA non-coding upstream 792895 47685925 ~ 47686567 (-)
G8116 NA non-coding upstream 2062346 48955376 ~ 48956463 (-)
G8118 NA non-coding upstream 2084594 48977624 ~ 49048073 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other downstream 3188 46883292 ~ 46887754 (-)
G7882 LOC107575789 other downstream 422508 46468125 ~ 46468434 (-)
G7868 NA other downstream 583623 46306926 ~ 46307319 (-)
AMCG00004372 LOC108423781,LOC105921217 other downstream 2178891 44623190 ~ 44712051 (-)
AMCG00004364 NA other downstream 2329367 44540163 ~ 44561575 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other upstream 155094 47048124 ~ 47306589 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other upstream 1570151 48463181 ~ 48480715 (-)
AMCG00004420 NA other upstream 2046994 48940024 ~ 48985311 (-)
AMCG00004429 NA other upstream 2518177 49411207 ~ 49425182 (-)
G8310 NA other upstream 3055831 49948861 ~ 49949592 (-)

Expression


Co-expression Network