G8044 (zbtb16)


Basic Information

Item Value
gene id G8044
gene name zbtb16
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48463181 ~ 48468811 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU9898
GCCAatagaaaaacagacagacaaacgtaagtccattttgtttatttttttttctaactgcAGATTTAAGGTATACAACTGAACATTGTTATTTCCTTATGagacttataaataaaaatacaaaaaatgttcaCTACAAAACAATCTACCGTTAGTAGGATGTAAAAAATATTCTCTTTCGCTATTGAAGGCACAAACTTCACTTAGTGACAACATGGAGAAAAAAACCTGCAGCATTAaatctcttttatttatttatttttttccacactcCATCAGAGAACACTGAAAAGTTACAAAGAGATGTGTCTGAGCctacactgaaagaaaaaatcaaataaaaaagaaaccaatgCTGGTATCTGCAGCTACTACGTCTTAAAGCAGCGCTtcaaaaaacagcattattttttctgtactgGAAAAGACAAAGGACCTTGCAAAGCACTAATGCAAATAAAGTTTATACAAATgacgaaaaaaagaaaaaataataattggcaCCTTCTAAGATTAGGCTAAGAAGAGGTGCTGAGGTAGACGTAACTATAACatcaattcaaataataataaaaaaaacactatttttctttttaatacagagCAAACTGACTGGCACTTGTGctgtcacaaaaataaaaaataaaaatatcacagacaagccaaaaagaaagaaaaaggaaaaaaaaaaaaaagcttttttttttattttatttttttacacttgGTCCGACAGGGCAATTGGTCCTCAGTGCTAGAATATAAAAAAGACAATGTCTTGGTGCTTCGTTACTGGAACATTTTAGTCTAAAGATAAATGGCACATGCATGACAACACTGCATGAAATGGCTACTCAGTCTAGAACACcacactgaaacacagtgaTTGAACAGCAGGGATGTCATGATACTTTCAACAgcatttcccccaaaaaatattttgatgtatAATGTATAGTCTACTTCTTTTTATGCACTAAATCTGACAGTAAAAGTATCCAGAAGATGGAAAAGACTGTAAAATCTGAGTTGTGAGCAAATCTATGTTCTATTTTCCATTTGCCTCTTAGGCTAGATAACATTGCATTTGGAGCATTTCTTAAAAAGACTATATTTAACCATGACAGCACTCTCTTATACTGCATTTAGGTCCTGATTACATCAGCATCGCAGATTCAAAACTCAATACACAGACCCAATGGCAGAGAAAGCCATCAAGAAGTGACAGATTCGACATGTGCTGTTGGGTGGGGGtgtgaagttttgatttaatatgggCATTAGTTTTAATAAACTGCAACAGTTCTCTTTGTTAcaattcttttttaaattacccCCATATATCACTGATGTTTCATACTATGGTACATATGGTTCCTTTATATATTATGGTTAAATCAGATATTAATTAAGATTTAACTTTAAGATGAACTAATTAAGAAATAAGGTAGGATTCTGTGAAAATGCTACCAAATACTCCAAACTCCAAAACTTGGTATCATCTTTTGTTTTATAGtagtaaataaaacaacccccctccccccccaccgaTAAATGCTGTTTTCACCTATCATCGACATCCCTGGTAGATAAACACTATTGTTGTCtgaaagtacagaaaataagCAGATATAAATGGACATTTTTCgttgaacattttcattttaggcACAAAGATTACAGAAACAGTTAAAGCCAGTTTCAGACTTACATTGTGGGAAGAACTAAATCGATGCCAAATCCTTTTTCAGAAACATATTTTGAGACAGTGGCTTAGAATGCTGCTTGGTTTCGCATCTATTTAGTGCATTTATAAAtctcacacatgcgcacacttacacacacacacacacacacacacacacacacacacaacacaggcaAAGAAGTTCCTTAAGCATCATAAACTTTAAATGACTACTTTTAGAGTAACTTGTTAACAGAATCTCTCTCACCCCATGCTGTTTACAGTCTATACTGGTTCTTAGTGTGATGTGTTCCTAAAGCATAATGTTCGCAGTGGATATGCTACCGCCAGATCCTTGACAGGAGCTCATTAGAAGTCATCTTCCTTTGAATGTTGTCTCTTTACCAATTACCAATCCCTCAATTCACAGTGTTTGGAACAATTTGGTGGGATTAAACAGAGAAAGATacatatgctttaaaaatgtattacagctattgaaaatgtatttcgaTTTCATTAACCCCCCACCTTTCAATTACTTCAAGTATtcttaaaaaagagaaaagaaaggctTTAGAAGAAGTTTTTTCCTCTTCATGATTGGCAGCACCTGACTCCAATTTGTTCGGCACGTTGTAACAAGTGGCTTTGTGGCAATTAGATTTAGTTCTTCACCAACAAATTTAGTGACATCCAGAAAGCAACACGTATTACtacactttcacacacatttatgtCCAACATTACAAAAGAGGTGCagggcaaaaaagaaaagaaaaaaaaaaaacagaaaaaatgaaaaatttgCCCTGCTGAATActtgaaaaaaaattgaaagggACTTacacttaatacaaaaatatcacaattttATATATCAAACCGGCTCTGTTGGCTCTTGATCAGGAATATGTTCATCTCAAGAAACTTAAGTTTTGCCGAccaacagtattttttttttctttctttcctttttctctctctttgtttacCACTTGCAGTTCCCATTGTCCAACGCACTCTGCATCAATGCATATTTGACCTGCTCTTAGTGGTTCAGTTTCAGTGAACCatcttttttttcacattattacaAAACTACAATTCTATTCACATATTTCAAGTTTAACACTTTTTAACGTTCTTTAAAGTACTATACTTTTACTAAATCATCACTGCCTCCCATTTCGATTTTTACCCATCTTTAAGGCttcaaaatgtttcctttttatcCACCCCTAAGCTGAAAGGGTCGGAGGGGACAACCAGGGGAAAACACCttggtttttaatttccctTACTTCCTATCAACAACTACCTTTCTAACCCTTTATATAAATGTAGATAACACACAAACGGACATAAAATACCATTGAAGATAAAGCATGAGATGAAGTTGCAAAGACGTCATAACGCAAAACACAAGAActacaaaatgtgcttttttgcaactgaaaataaaaagaacaacttAGAGGTAGCTTTTATGACAATGACCgaaacaaaaaaagttagaCACAGCTTTTTAATAAGCCgagctaataaaaaaaataccaatttTGGTAACAATAATgcacaaaatataatgaaaagaaaaacataattgctATTTTCACCGCGGCACTTAAGTACTCCATTATTCCCGAGTTTGCTTCGCTTTTCCACGTCACCCTATTGTGACACAGCTttcagacacaaaaaaaaagtcatttaaaaaataataataaaattaaaaatcaaaatacaagCTCATGAGGTCACAAAAAACGAGGTAATTCAAGTACAAATGTGCTGAAATACaccaaggttaaaaaaaaaaaaaaaaaaaaaaaatgaaagaaaaataaaaaatatataaagagtttcattttccttcttttatCTCAAGCCACCAGGGCTGGGCAACTAAATAGTCCAGGCAACCGCCTCACATTGTAGCTGCGAAACACGTACTAACTGTTCATTTTGATATGTTGTTAAAAGTACTGCATTTCAAGAACCGTTATATTTGATCGCGAACATGATATGGTCACATTAGTCATTTTGGTCTCTATTATATTGGCATAAGAAGTGAATTAGTGTGAAGCACTGTGGGTTTAAAAAAGGCCGTACTGGGTTGTAGCTGAAGCCCCCTGCTTCTGAAGTTACCACTGGTTGAGTTATCCCAGTTAGAAGTGTAAGCCACACAGGTCAGGTATGTGTAATTGTGTGCGCTGaggaataacaaattaatacaagGAAGAAAGTTctgtataaacatacatgttttttttgttttgtttttacaggtaATTTGAAACAGCACCCCCCTACTGAGCAATCCCATTCTGTGTCTGGAGCCAAGAATGCAGAAAGCTGACATACTTTCTTAATGCAATATATCTGTACTATGCTACTGACTGCAGCTCGCAAAGATATGATTATTCATGTGACAGTCGCAAATAAGTACATGGATGGATACTCGCAGAATTTACCAGCCGCTGGTTAAACTGCTTTCCAGAAAAGCCCTTGAGGAACAGTAATGCAACACGAATGGTAAAGTATGGAACACTTTTTGAATTCACAAATGAATTCCGTTGTGTAGTTTTGAAAACATACCACGACTGGAAAAATCCTGGACTTTTGTCTCAGGAAATTCACAGCAGGTAAGAGATTGAAGAGAAAACCTAATTCTGTGTGCTGTTACACAGGCGTTTGCCAAGCAATGCATCTGTGCCAAAGTGGATACAAAATGTAAGATTTGTATCTGAAAAAAATACCAGCATTGGAACTTTAAGTGCTCTATGCATCTATTCAAAACCAGCTGAGCAAAGCGAGGCTCATTCGAAGCAGCACCAGAGTTAACCTTAGCCGGGAGAGATACCAAAGAAAATCGAATTCTGCCAGATTACAGGGAGAGACGATTTACTTTAAGGAAAACTATTCTCCAAGTCCTACTTTCCTCTGTCTGGTAATGCAGGAACGGAAGGCACACCGCTTTTTCCACTGAAAAAGGtgagaaacagaaataataagaaatccCCCCAAGAAACCCTCTAATATTGAACTGCTGCAGTCAGTAATAATGCAATCTGCAGCCCCTTAGCAGCAGAGCAAGGGAGCAATCTGGGACATCGCTTCGGCATAGCCACAAGAGAAAGCTCTGAGCAGTACTCCCACTTTTGCAAGCCCGACAGACACGACAGTCTGAAGCTGACCAATCATGACTGGACTCCGGGGAATAGTAAGCAACGCAGCTTGTGGCCCAAAGAGATGGATCTGTCCATGTTTCTTGTGACCTCACTGGAAGTTACAGAGATGCCACAGAGGTACTTTCTTAAGCATGCATGACAGCGTTGTTATTGTCTgaatattatctttttttattttttgatggtggtctttaaaacaaacaaacaaaacaaaacaaaaaaacaagaacaaaccaatacagaaaaaacactATCAGAACAGGCCTCCCTAACCTCCCCTCCCTCCAGGCTCCCCTCCTGCATCCCTTGTATTATTCTGTTCCCCATcgtctttattgtattttatttgaactgtgtattaatggatttatttgtcttatttcttaacatttttaatggtaattaattaaatttttgtgttttgcctgtttttgttgttgttggtgttggtgttggtgttggttttTTGCTCAGACGTAGCAGAGATACAGATAGGTTTTCTCTATCCTCCAGTCCGGGGGAATATCCTCTGGCTTGTGGCCCTTCATGTGTTTCTGCATGGCGGACAGGCTCGGGCAGTACTCCAGGCAGATGGTGCATTGGTAGGGAGACGCTCCATTGTGGGTCCGGAGGTGCTTGATCATAGCGGAATAATCTCTGGAGCGCTGGTGGCACAGTTTGCACTCAAACGGCTTCTCACCTGCCgagaaaaaagcaacacag

Function

symbol description
zbtb16 Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; protein homodimerization activity; and transcription corepressor binding activity. Involved in several processes, including positive regulation of cell differentiation; positive regulation of ossification; and regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in PML body and nuclear speck. Part of transcription repressor complex. Implicated in acute promyelocytic leukemia.

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9898 True 5604 lncRNA 0.37 2 48463181 48468811

Neighbor

gene id symbol gene type direction distance location
AMCG00004404 LOC104954612 coding upstream 10484 48445728 ~ 48452697 (+)
AMCG00004407 NA coding upstream 19914 48428416 ~ 48443267 (+)
AMCG00004408 ncam1 coding upstream 70365 48373270 ~ 48392816 (+)
AMCG00004406 NA coding upstream 108006 48350861 ~ 48355175 (+)
AMCG00004405 NA coding upstream 132286 48324125 ~ 48330895 (+)
AMCG00004414 NA coding downstream 144338 48613149 ~ 48624152 (+)
AMCG00004416 LOC105903796 coding downstream 160361 48629172 ~ 48643430 (+)
AMCG00004415 NA coding downstream 361727 48830538 ~ 48846603 (+)
AMCG00004422 NA coding downstream 540880 49009691 ~ 49040036 (+)
AMCG00004426 LOC106580931 coding downstream 810349 49279160 ~ 49293068 (+)
G7977 NA non-coding upstream 777300 47685520 ~ 47685881 (+)
G7974 NA non-coding upstream 814607 47648188 ~ 47648574 (+)
G7949 NA non-coding upstream 1465376 46992217 ~ 46997805 (+)
G7911 NA non-coding upstream 1740093 46721829 ~ 46723088 (+)
G7906 NA non-coding upstream 1745926 46715778 ~ 46717255 (+)
G8083 NA non-coding downstream 378715 48847526 ~ 48848126 (+)
G8103 NA non-coding downstream 487156 48955967 ~ 48959831 (+)
G8111 NA non-coding downstream 555345 49024156 ~ 49029183 (+)
G8140 NA non-coding downstream 777677 49246488 ~ 49248034 (+)
G8167 NA non-coding downstream 965232 49434043 ~ 49435751 (+)
G7999 NA other upstream 316025 48146888 ~ 48147156 (+)
AMCG00004380 NA other upstream 2494875 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 3822449 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 5772072 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 6246819 42210430 ~ 42216362 (+)
AMCG00004421 NA other downstream 428306 48897117 ~ 49026355 (+)
G8099 NA other downstream 463639 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 574779 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 829925 49298736 ~ 49318835 (+)
AMCG00004442 NA other downstream 1337550 49806361 ~ 49814024 (+)

Expression


Co-expression Network