AMCG00004749


Basic Information

Item Value
gene id AMCG00004749
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 116491 ~ 122965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004749
CGCCGCCTTATAAATCACGGAGCCATTGAAGACTCGCTCTCATTTGGCTGATTTCGGCACAGAGGAAGCTGTGTGGACCTTGAATAAAACTGAAGATGGCATCCAAATATCAAGGTCCTAAATGGTGCAGTTTTGGATTTGGAACCTAAAATTAGATGAAGAATCTGAAGACTTGTGACCAATGGTCTGCTTTACCTTTTGAGGAGAAGGAAGAACTGCTGGCTAAATGGCAGGCTTTACATGGGTGTACAGCGCTGAACCAAAGCTGGATTTTGAAGATTCAGACTGCACCCTTGTACTCCACTGCTTGGTGGAGCCAAGGCTCTTACTTTTGCCATGAAGTGATCTAAAGGATATGAGAATGGTCTGCAGCAGCAAGACTGCATGATTGACATCTGGGGGCATGGAGGAGACCCTTCTCTGCAGTAGCTGCCCTTTTCCCTGAAGCTCTATGTGGAATTGGCATCTGGGGATTGAAAACTGTCCCTTTCCAATGTTGAcaattttttaaactaatatacTGTCAGACTGTGAATGTTGACTTGTAGATTTGGCATTCTGCTGCAACCTACACTTGTCCCCACCTAGTGTTCAGCTTTAATATTGCTCTCCTAGAATGGGTGGTCCATTATTGGGCCGTTAACAACATGACAGATTTAACCTGATCTTGATTTTATAACTATTTGTACCCTGTTAATTCTGTGAACcattcattcacattttcacCTTTTCCCCATGGGGAGGGGGATGcaagttcatttttaaaccCCTCCTCTCCAACCTCATAGTTGTGAGGAACTGTTTTGCCATAGCTGAGAAGTCTGGCTATTCAAATCCTGCCTTTGACTCCTAAatatcaaattgaataattgagGACTTCTTTGTTTTCAATACTTGTGAATGTGGaatgatttataattttgtatctaaatgacaataaatacattttgaatatctGTGAAATTTACTTTCTTCCCCAATGTTTTTccattgtatttgtgtatttaatgaaTCCTGTACTGCTGTGCATTTATAGTCACAGTGCACAGACCATAACCTTGTGGAGGGGGGGGATGAAGCTACAGTCCTACTTGCCACACCTTTGggtattgtataaaatataattttacttatAATAAGCTGTATGGTGACTTTATGCATGTtgactttaatttgtattttattcaatactgCAAATAGGCAATCGATATGAAAcccagtaacattaaaaaagaccgctatactgaaagtagtaaatactagAGACACTGGAACACTGTAACCTAATAGTTGGGTTAACTAGTAAAAGACTGCCTTCCACAGTTTGTGccaacattacatatttttctgtatataataatgggtcaattgcaattaACTCAGTACAGAGCTGTGtac
>TU179582
ACGGAGCCATTGAAGACTCGCTCTCATTTGGCTGATTTCGGCACAGAGGAAGCTGTGTGGACCTTGAATAAAACTGAAGATGGCATCCAAATATCAAGGTCCTAAATGGTGCAGTTTTGGATTTGGAACCTAAAATTAGATGAAGAATCTGAAGACTTGTGACCAATGGTCTGCTTTACCTTTTGAGGAGAAGGAAGAACTGCTGGCTAAATGGCAGGCTTTACATGGGCAGAAGCTTCTTGATGGTTAATTCAATGGTGTACAGCGCTGAACCAAAGCTGGGCACTGAGTGGGGGATGTTTCATTGTGTACATTGCTGATTTTGAAGATTCAGACTGCACCCTTGTACTCCACTGCTTGGTGGAGCCAAGATCAGTTGAAATGGTGACTTCAAACTGGCTCTTACTTTTGCCATGAAGTGATCTAAAGGATATGAGAATGGTCTGCAGCAGCAAGACTGCATGATTGACATCTGGGGGCATGGAGGAGACCCTTCTCTGCAGTAGCTGCCCTTTTCCCTGAAGCTCTATGTGGAATTGGCATCTGGGGATTGAAAACTGTCCCTTTCCAATGTTGAcaattttttaaactaatatacTGTCAGACTGTGAATGTTGACTTGTAGATTTGGCATTCTGCTGCAACCTACACTTGTCCCCACCTAGTGTTCAGCTTTAATATTGCTCTCCTAGAATGGGTGGTCCATTATTGGGCCGTTAACAACATGACAGATTTAACCTGATCTTGATTTTATAACTATTTGTACCCTGTTAATTCTGTGAACcattcattcacattttcacCTTTTCCCCATGGGGAGGGGGATGcaagttcatttttaaaccCCTCCTCTCCAACCTCATAGTTGTGAGGAACTGTTTTGCCATAGCTGAGAAGTCTGGCTATTCAAATCCTGCCTTTGACTCCTAAatatcaaattgaataattgagGACTTCTTTGTTTTCAATACTTGTGAATGTGGaatgatttataattttgtatctaaatgacaataaatacattttgaatat

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004749 True 1398 mRNA 0.39 9 116491 122965
TU179582 False 1032 lncRNA 0.41 12 116507 122522

Neighbor

gene id symbol gene type direction distance location
AMCG00004747 osbpl9 coding upstream 7288 48855 ~ 109203 (+)
AMCG00004748 NA coding upstream 85806 20381 ~ 30685 (+)
AMCG00004745 NA coding upstream 108263 5996 ~ 8228 (+)
AMCG00004746 NA coding downstream 11416 134381 ~ 138253 (+)
AMCG00004759 NA coding downstream 356881 479846 ~ 507826 (+)
AMCG00004757 LOC107707585,LOC107599011,LOC107657879 coding downstream 416810 539775 ~ 557281 (+)
AMCG00004758 NA coding downstream 527737 650702 ~ 659789 (+)
AMCG00004774 NA coding downstream 1284034 1406999 ~ 1407247 (+)
G142737 NA non-coding upstream 6098 109314 ~ 110393 (+)
G142776 NA non-coding downstream 56422 179387 ~ 269208 (+)
G142835 NA non-coding downstream 312457 435422 ~ 439221 (+)
G142847 NA non-coding downstream 443418 566383 ~ 570143 (+)
G142881 rpe65,LOC107708597,LOC107657893 non-coding downstream 544992 667957 ~ 701758 (+)
G142910 NA non-coding downstream 666073 789038 ~ 792943 (+)
G143075 elavl4,LOC106613894,LOC103028496 other downstream 2317576 2440541 ~ 2559080 (+)
AMCG00004788 NA other downstream 3000116 3123081 ~ 3160209 (+)
AMCG00004793 NA other downstream 3254850 3377815 ~ 3395158 (+)
G143366 NA other downstream 3826461 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 3986057 4109022 ~ 4109655 (+)

Expression


Co-expression Network