AMCG00004750 (LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107665078,LOC107758007)


Basic Information

Item Value
gene id AMCG00004750
gene name LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107665078,LOC107758007
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 215361 ~ 221177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004750
AGCAATGCCACATTGGCAGAAGGTGGTTCAGTGCTCTGTTGTCTTGACCATGGCCCCTGTTTGTGTTGTAGGCGCTTTGGGACAAAGTGTGCCTCCTGTCAACAGGGCATCCCCCCAACACAGGTGGTGAGGAAAGCCCAGGACTTTGTGTACCACCTCCACTGCTTCGCCTGTGTCATGTGTAACCGGCAGCTGGCCACGGGAGACGAGTTTTACCTCATGGAGGATGGGAGGCTGGTGTGCAAAGAGGACTACGAGACGGCCAAACAGAACGACGATTCAGAGGCGGGGGCCAAGAGGCCACGGACCACCATTACGGCCAAGCAACTGGAGACGCTGAAGAACGCCTACAAGAACTCGCCCAAGCCTGCGCGGCACGTAAGGGAGCAGCTGTCTTCGGAGACGGGGCTGGATATGAGGGTGGTGCAGGTTTGGTTTCAAAACCGGCGGGCGAAGGAGAAGCGGTTGAAAAAGGACGCCGGGAGGCACCGCTGGGGACAGTTCTATAAGAATGTGAAACGGAGCCGCGGCGGGTCCAAGCCGGAGAAGGAAAGCTCAGCCGAGGACGGGGGGCTTAGTGACAGTGAGTTAAGCTTCAGAGAGGACCAGATCCTGTCAGACTTGGGCCACACCAATGGGTTGTATGGCAGTGTGGGAGACGTGGCCAATGGCAGTCTGTTGAATGGCAGCTTCTCATTGGACGGCACGGGGCAGCCATTCCATGACCTACGAGCGGGCAGCCCCTACGGGGTCCCCCAGTCACCCTCGTCCATTGTCTCTCTGCCCGCCCACACCCCCCTGCTCAACAACCTGGGCTTCAATATGGACAGCATCATGAGCCAAGGAGGGCAGGGGGTCAGCCAGGCACTGAGGGCCATGGCGGGGGGTCCCACCTCTGACCTCTCAACAGGTAGCAGCGCTGGCTACCCAGACTTCCCCACCAGCCCTGCTTCCTGGTTGGATGAGATGGACCACTCCCAGTTTTAG

Function

NR:

description
PREDICTED: LIM/homeobox protein Lhx4-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09374 LHX3_4; LIM homeobox protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004750 True 987 mRNA 0.59 4 215361 221177

Neighbor

gene id symbol gene type direction distance location
AMCG00004751 NA coding upstream 45797 266974 ~ 305834 (-)
AMCG00004752 NA coding upstream 89687 310864 ~ 364423 (-)
AMCG00004756 NA coding upstream 155941 377118 ~ 402042 (-)
AMCG00004755 NA coding upstream 194185 415362 ~ 422526 (-)
AMCG00004754 NA coding upstream 204095 425272 ~ 434187 (-)
G142766 NA non-coding downstream 104869 109264 ~ 110492 (-)
G142765 osbpl9 non-coding downstream 106150 105040 ~ 109211 (-)
G142828 NA non-coding upstream 85939 307116 ~ 351627 (-)
G142890 NA non-coding upstream 483113 704290 ~ 705016 (-)
G142891 NA non-coding upstream 511307 732484 ~ 732959 (-)
G142902 NA non-coding upstream 559241 780418 ~ 782340 (-)
G142920 NA non-coding upstream 567925 789102 ~ 792949 (-)
G142773 NA other downstream 84658 127778 ~ 130703 (-)
G142770 NA other downstream 92834 119695 ~ 122527 (-)
AMCG00004763 LOC107393006 other upstream 422827 644004 ~ 646611 (-)
G143145 NA other upstream 2488377 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2899052 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3887905 4109082 ~ 4116414 (-)
G143659 NA other upstream 5515632 5736809 ~ 5783184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_05902969_05911426 LHX4 coding CI01000010 null 5902969 ~ 5912165 (+)