AMCG00004754


Basic Information

Item Value
gene id AMCG00004754
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 425272 ~ 434187 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004754
ATGCAGCGGGAGGTGAAACGGCAACATGGTGGCGACCAGGAGCGGCACGCGCGTGGAGTCTCCCAGCAGCGCCGCGTCGGTGCAAGCGCCCGCACGCGCGCCCGGAGGACAAGGAGAGCAGCGATGAAAGACTCGCAATCGGAGGCCAACAGTGACTCTCAGCATGATGATGCAGAGGACCCGGGTTTGGGTGATCTTCCAGGGCAGCTGCCGAGCTCCACTGCCAAACGCATCGCAAGAACCGCAAGTAGGCAGCCACGCCGGCAGGGTATGGGGTCCGCAAATGAGGCCGAGGTTTCGGAGGCAGAGTCCTGCTCCTCTGCCGTGTCTGCCTCACGGGGCAGCCGCAGGAACCGAGTTCTCCTGCGGGATCTATGGAGACCGGAGGAAGCTGATGTCTCGGAAGCAGAATCATGCTCCTCCTCCGTGTCTGCAGCCACCCGCAGATCTACCAGGAACCTCCGTACCAGGGTGTGTGAGCAGAGCCAGGCCTCCACTGAGCGCCCAAATGAGGAAGCGGAGATCTCTGAGGTAGAATCCTGTTGTTCAGACACGTTAGGGATGAAAGCCCTCGGAACTCGGAGAGTGACCCGGAGTCGGCGGAGTGTTGCTCCTTCCGGTACTGCACCCAAGCCCCCTACTGAAGACGCCGAGCTCTCCGAGGCAGAATCCTGTACTTCCGGTGTGTCCGGTCTGCAGGGTTCGGCCCTCCGCAGATCAGCGAGGACGAGGAAGGGGAAGAATGTGCTTCCTCTCCCTGAGTTTCTGAAGGAAGAGGGCAACACATCTGCCACCTCGTCTGTGTCTAGTCCCCGCAGACGGACAAGTAGAGCTTCCAAACTGCACCAGGAGCTGGAATGTGCAGATGTAGGAAGTCCGAAAAGAGCCACCCTCAGACAGACCACTTCCAAAGTCACCCAAGAGGAAATGGTCATATCAGACAGCGAGTCTGACATTTCTGTGACCTGCCTTGTCCCTGGGAGCCCTGCTTCCAGGAGAGGAATGGACATCAAGCCAGTGGTGGCCTCCAAGTCCCCCAGCAGTAGTCGTACTGGGTCAGGGAGCAGTCGCCAAACAATGTCACCCCCTGGGATCATTGCTGAGGAGGAGGCAGAACTCCCCTCATCTCCTGCTGCTTCTCCTAGTGTTCCAGTTGGGGCTGCAAAAGTAAGTGAGGGAGAACAAACACGGGAGAGCAAACTTGTACAAATAGTGGCATCCCCCAAAAGGACATGCCAGTCCCCTTTAGAGCTTGCCTGCCCAACTGAAAAGCCCACCACATTGAAGGCAGAGGAGAGAATGGAGGAGGAGGCATTGGAGAAAGTAGAGGAGGTGGCATTGGAGAAAGTGGTGGAGCAGGAGGCATTGGAGAAAGTGCCGGAGGCAGATGAGAAAGTAGAGGAGGCGGCATTGGAGAaagtggtggaggaggaggcagaggagagagTAGAGCAGGAGGCACTGGAGAAAGTGGCAGAGGAGGAGGCACTGGAGAAAGTGGAGGAGAGaatggaggaggaggcagaggagaaaGTGGAGCAGAGAGTAGAGGAGGAGGAAACCATGGAAATGGTGGAGAGGTCAGTGGCAGATGAGGGACCATGTAGCACTGCACAGGAACCACAGTGTGTGACATCCGCTACTGAAACATCACTAGCTGTCAGTTTGCTTTTGAGTAGTGGTGAGGATGAGGACGAGGGGGAGAGTAGTTTTCCTGAAGCCGGAGATGAGAAGGAGGGAAGCGCTTCAGACAGTGACGATGAGGCAGGCCCATCCACCTCCCAGACCAAAACCCAGCTCAATGAGAAGCACTCTGCGCTAGAAGACGATATGTTCATCATAGACACTCGGCCAGGGTTTCAGACTGATACAAAGTATTACCTGGATGCAGAAGGGGAGGACGAAGCAGAAGAGAGCGAACAAGATGAAGTGAGCGATAAAGAAGTAGACCAAGGAGAAGAAAGTGAAGAATTCATAGACGAAGAAGATGATGAGACTGAGATTCTGTACAAAAGCAAAAACCCAGCTTTGGCTGATCTCTCAAGCAGCATTGATCCAGGGCTAAATATGAAAGAGTTTGGGGGACTGTGTGTTAATCTTGAAGGTGGAAAAAAGAAGGCAGTCCCTAATCCCCTAAAGAAATTGAAGGAGAAACGCAATCAGGATGAGCTTTTAAAGAACAGCGTGATCACTccagattttgaaaagaaagatgCTGTACCACCATACCAAGAATCAAAGCGTCAGCTCAAGCTGAAACGCAAGGAAGAAAAAGCCAAGACCACCGGAGATGGCTGGTATAACATGAAGGCCCCTGAACTGACTGAAGAGTTAAAGAATGATCTAAAAGCCCTAAAGATGAGGTCAGCTATGGACCCCAAACGATTTTACAAGAAGAATGACCGAGAGGGATTCCCTAAGTATTTCCAGGTCGGTACGGTAGTGGACACCCCTGTGGATTTCTATCACGCACGCATTCCGAAGAAGCAGAGGAAGAGAACGATTGTGGAGGAGTTGATTGCAGACGCTGAATTCAGGAGttacaacaagaaaaaatacaagcaGATCCTAGTGGAAAAAGCCGACCTCTCCGCCGGGAAAAAGAATCGCAAGAAGAATAAATTTCGCAAGAAGTGATCCCAGCAGCAATGGAGCATCCTGGTCAGTTTGTTTAGAGAGATGCAAAGGACTACTCTGCTGTAGTTGTATTAATTTCTCTTACAAAGTAATCTAAAGAGTGCGAATGTCTACATTTTATCTCGATAAGATGAGGTATgatagaatatataaatatatatatgcacaataaatcagcatttttttaactgcaaatCATATTACCCTGTactcatgtctttttttttttattaatgccaaagaatacatttatttctcatttgtatttgttttttggattcAGCAGAGAAACAGTGTAAAGCTTAACTATAAGGAAGATGTATTCAAAGGAACTGTCGCAGTGATGCTTAATATGGAAGGACACATCATTTGGCCCAAAGCATTGAGATCTAAGTTTTTGAGCAGCACCCAAAGGATTTCAAAGGttgataaaataattgcaagAATGAGTACAGATTAAATCAGGAGCAATAGAGAGCAGGGGGGTAGCAATTTGATCATTCCACCACGAGGGGGCGTTGAAGTTTCTTACTCATGTAAGGAATCCACTGGATGATGAATCGGTAAGGTAATTTGGTAATCAAATAATCTAGAGAAATAGGTGATGGAGATGCAGAGGATCCCCAGGGCTAAGCgatggaatttattttttcaagtctAACATTATATAGGCTACAGAATAATCATCAATCTAGATAATGTTGTGAACtataagtctccctggataagggtgtctgccaagaaataaatgtgATGCCCCTTTGTCATGCCTACTTCTGTGCCTTTGCTACAGACTTCTCAATACACAGAAAGATGGGCAATTATACACAGGCCCTGTATAAGCCAAATCATTATTTGGATAAATTCAACAttgttgctgatcaatactagcaTTTGTTAGTTATAACTTAGTGGCCAtggatttgaatgcatttaacaacacaaaacagataaAAGGTGAACAATGTATGCTAAAACAGACATAcagtatatttcaaataaacaattcaaagtcgaatgtttaattttgttcatgTGTTTGCAGAATGTGTTCACCTTGTTCTGGAGGATCATCAAACAGATGCAGATTGtcttttgaaaaacatgtatttccacTTCAAAGTCACCTGACACCTGTTCGTAACTCTTAGATCTGTTTGTAGCATGTTATTCACCACAGCTTTGAATCTGTGATACTGTGAGACCAGGTATTACTCCAGTTATATACTTTATTGTATAGAGATCAGTGACCTGAATCAGTGTTGTCTACTATTAATAGTTTTATGATGCATCGCTGTTATTACAGAGAATTCCTCTCCCGTTTTATagccttcacacacacactaattcaTATGAAATCAGGAAGTACATGACATATTATTGCTCAACAGAATGAGGAAATTTAACTGTCAAACTGTTTCAGCTTAGGGCTGCACTTAGAAGTGTCTCCAGGGCTGTCTACAAGTTTACGTTAGACTGTTATTGAGGTAAGAAACGGAGAAtatcctttgttttgttgtgtgtgtatgtaaatgtaatatcttTCATTTCTAACATTTTCTAGTATTATATACAAAGCATCCTGTTATAGTTTTTTGGCAACTATAGTTTTACCATGTAGTTGTTTACTACAAAATGCACATACATTAAAcctgaaaatattttcaaaatgtatgaaagTTAAGTTCAATTCATTTTAAGAGAGTCCTAATCctccttgttttttgtgtaaatgGGGAAAAACGTATATTTAAGAATCTTTTCCATATCCAatcttttatttacatgttacCTGTACAGAAATTCAATCTTGCACTTAATTTAAGAACTTATACATGTTCATTAggaaactgttttatttataagcaTGTATTTTGTCAATTCAGAAATGGACAACTATTTTTGCAATCCGACTTAATATCCAATAGTGTGCTCActctccattttttttatttttttttattttttcttaagtaATGTTACGGAGGTGTGTTGCACTGAGTGCTCGTTATTGTGTGGAACTTAGTCGCAGCGATTCCTGGTTATTGGCTGATAGGATGTTacgtattaataataataatattttgaactTGGGGGAATTTAGGTGTTTGGCACAATCGattccctgccccccccctgGACCTCACTTCACGAGCACCTAccacacacccctccccccctgcCGCTAGACCTCACTTCAGCAGCACCacatccccacccccccatgaGTTAATTGCTCACAGATTCCCTGTTTGGCGTCTCTGTACacattctggactggggcaagagcggcACTTTGTACTGTC

Function

GO:

id name namespace
GO:0034660 ncRNA metabolic process biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004754 True 4943 mRNA 0.45 7 425272 434187

Neighbor

gene id symbol gene type direction distance location
AMCG00004755 NA coding downstream 2746 415362 ~ 422526 (-)
AMCG00004756 NA coding downstream 23230 377118 ~ 402042 (-)
AMCG00004752 NA coding downstream 60849 310864 ~ 364423 (-)
AMCG00004751 NA coding downstream 119438 266974 ~ 305834 (-)
AMCG00004750 LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107665078,LOC107758007 coding downstream 204095 215361 ~ 221177 (-)
AMCG00004753 NA coding upstream 3787 437974 ~ 445479 (-)
AMCG00004761 NA coding upstream 125938 560125 ~ 584445 (-)
AMCG00004762 NA coding upstream 229338 663525 ~ 673875 (-)
AMCG00004760 NA coding upstream 243679 677866 ~ 688451 (-)
AMCG00004765 NA coding upstream 358842 793029 ~ 799872 (-)
G142828 NA non-coding downstream 73645 307116 ~ 351627 (-)
G142766 NA non-coding downstream 314780 109264 ~ 110492 (-)
G142765 osbpl9 non-coding downstream 316061 105040 ~ 109211 (-)
G142890 NA non-coding upstream 270103 704290 ~ 705016 (-)
G142891 NA non-coding upstream 298297 732484 ~ 732959 (-)
G142902 NA non-coding upstream 346231 780418 ~ 782340 (-)
G142920 NA non-coding upstream 354915 789102 ~ 792949 (-)
G142953 NA non-coding upstream 735826 1170013 ~ 1170516 (-)
G142773 NA other downstream 294569 127778 ~ 130703 (-)
G142770 NA other downstream 302745 119695 ~ 122527 (-)
AMCG00004763 LOC107393006 other upstream 209817 644004 ~ 646611 (-)
G143145 NA other upstream 2275367 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2686042 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3674895 4109082 ~ 4116414 (-)
G143659 NA other upstream 5302622 5736809 ~ 5783184 (-)

Expression


Co-expression Network