AMCG00004760


Basic Information

Item Value
gene id AMCG00004760
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 677866 ~ 688451 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004760
CTTTGCTCGGAATTTCAAACTTTGTCGGTTGAATGGCGCTTCAGACAGAAAGATGCAGAAAGATGTCCTTCCGTAAGTGACGCGAAAAGACTACAGGACAGtgttaactgtatttaaaatgaacttccAGGAATCTCGCATCGTCACCCCGGGTCCTTACAGGGCTACGAAATTGTGGAATGAAGTCACAAAGCTTTTCCGTGCTGGgatgcctttaaaaaaacacaggcaACACTTCCGAGTTTTTGGCAACAGTTTCACTGCTGTGGCAGCTGCAGACTGGTTACATGAGCTCCTTAGAAACAATAGCAATTTTGGCCCTGAGGTTACCAGGCAGCAGACCCTCCAGCTGCTAAGAAAATTTCTTAAAAACCATGTAATCGAAGATGTGAAGGGAAGATGGGGTTCTGAAGACCTGGAAGACAATAGTCAGCTCTTTAGGTTTCCTCCAACATCACCATTAAAAGCAATTCCAAATCGACCATCGCCATTGAGGAAGAAAACGGCAGCCATTTCTACCAAGGATAAGGAGGGCTTTTTTGCTCAGTTATATAGGAGGAGTTCTAAAAAAATTGATTGTGACTCACAGGAAAACATTGATCCATTAATCCAAGAAGAGCCCACCAGTGCCCTTGAAAGGGAACAAGTACATAGCAGAGAAATAACCCAGGAAGATATTCATGATGTTTGGAGAAACATCACTCTAACGCAtttgcaTAAAACTTTGGGTTTGACCTCACTAGAAGATGTGATTGACCCAGCCCAAGTAAATCCTGAGCACATTGTGTACAACATGACCAATGTCAACAAGCATGGTGTTGTCACATTAGAGGACAAGTCAGGAGACCTACCTCATTGGGTTTTGTCTGCTATGAAGTGTTTGGCAAACTGGCCCAAGTATGATTCTAGCCAGCCATCCTATCCTGGGTTTGAGAGAGATGTGTTTAAAACGGTTTCAGATTATTTTCTAAACCTACCTCAGCCACTGCTCACATTTGAATACTATGAGTTGTTTGTCAACATTTTGGTGTGGTGTGGCTACATTGTGGTCCAAAAGCCTCAGTGCGGGAAACGCAAAAACCAGGAAGAGCCCTGCTATCCTCAGCCAGCCAAAACCCTGCACCTCAATGACAATAACCCTTTCAAATCGACCGAGTGCCTTTTGTTAAGCCTCCTCCGCAAGGAATCTTTAGATGAAAGCGAATCGCCAATGAAAGAGGTGCTGTGCTCTAATGTGGCAGCTAAGCACATGCTAAAAGGCTGTGAGAGGAGGATACAGCAGTATGGTGTGGCTGGTAGAAGAGCCAGTGACATAGTAGGCGGCAGCTGTCAGAACCTTTCAGGGTTTCAGAGCGGCGGATCCGTGCCCATGAAGTTCAGGCCGAGGTGTCATTCCCTGGAAGGAATTATGGACGTTTCTCACACCGGATCTTCGGCTTCTGCTTCACCGAGATCTTCAGAGAGCTTGTCTTTCAGTGGCACTGTGTTCAGAAGCTCCCAATGTAGAGCTGGCTCTCTGACTGACATTCGCCCACGGGCGGAACACCACGTTTCTGTTTCCACGACCAGCCTATTGCCCACCAGCGGCAGTGGAGCAGAAGTCTCCAGTTGCCAATCTTCTAGGGTTTGTACTCCATCATCCCAGAGAGTTCCCCCCGGAGAAAGTCCCCAGATTATCCGCTCCAAAAGCATCGGGAGCTGCGCTGATATCGGAGAGCATAAAGCACTCTCCTCCAGTTGCTTTAGCATCCACGCCCCTGTGGCTGAAATTACCATGAAGCCAGATTTTTCCTCCAGCATTGGCCTGAGGAGGCCCAGTGTGTTAAACTTAGCTGCCACCAAGAACCCCGGATGGAAAAGCGGGGCTGTGGGCAGACTCTACAAAAGCTCTTTGGATGTCTCTGAAAAGTTGCCCACTGTTCCAATATCCACTTTTGCACGTTACTTGAGTCCTGAACAAAGTCTTTTCCAACCCCAGTTGGAAAGGGTTGCAGTAGAAGCCCTCCAGCTATGTACTCTTCTGCTGCCTCCAGCTAATCGGCGTAGGCTGCAGCTACTCATGAGAATGATCTCGCGAATGAGTCAAAATGTGGACATGCCACGTCTCCATGATGCTATAGGAACTAGGACACTGATGGTGCACACTTTCTCACgttgtgttttgtgctgtgAAGAGGAAGTAGACCTTGATGAGCTCCTGGCCACACGGCTGGTGTCCTTTTTAATGGATCATCACCTTGAGATTCTTCAAGTTCCGGAGTACTTGATGACTGCTGTTCAGGACCATATAGACTACCTCAGGAAAGTTCAGaTTACATACCCAGGGCCAGGGGTCAGCGTCACTCTGCCTACCTACTCCTTCTGTAGACAGATCACCTCGCAGGAGTTCGAAGAACAAAAGCTTTCGGTCTCTCAAGCTGCCATTGCTGACCTCCTAGAAAACCTCATCAAGGACAAATCGTTATCtatgaaggagaaaaagaagaagcttAAGCAGtttcaaaaACAGTATCCAGACATCTACCACCGTCGGTTCCCAACCACAGAAAGTGAGGCCCAGCTTTTTGTTGATAAGCCAAAAATAAAGCCTCCAATGTTGCTGAACCTGAAGAGACCGAAAACACTTGGCATGTGGAACTGAAGGCATATCTGTTCAGTGTtcgtatatttattttacattggaaGTTTGCAAGTTGGAACTCTAAAGACCTTCACGAGGGACAATCAACAATCTCCTTTGGTTTGGGGAAGCTAATATAACATGTTTGTCCTGACATACTGACTATACTTGATCAGAGAGATTCAGAATTATattgtagattaaaaaaatactatattttgcTGAAGCTAGGAGGTATTTGAATGGTTAATTTATTCAGGGTTTAAATAAGAGATGTATGTATTCTCTGTAGGTAGCTGccgtttatatattttttaagctcTTTTACAAACGGGCGTAATTGAGTTACAATATGATGGGGTAAATATGACAATCTTGGGAGATGAATGAAGCCCTTTTTCTCAAGGCTATAGACTGACTGGGAATGCAGAATATCTGTGCATTTGTACACACTCCAATAACCAACGTGTCACTCCTTTTGAGTTTGTATTCCACGttctatttcattattttctgtgtgtgagtgtgtgtgatcaCAAGATTATTGCATcttaatgttttctgaaattcaCATGACATCCAAAGGAAGCTTTAATTTGTGTCTGTTAATTGTTTCATACATGGATTGCCCTTTGCTTTTAAGCACAGCAGGTAAGTTTTGGACTCCATGTTGATCATGTTCTGCCATGCACAGTCTGGAAGATGACATTGTTCTGCACTAGggtctgctttgttttgtttgtaacacAAAGCAATGCCAACAGAATTATTTACTTCTTGTTCTGGACATACTTGTTATATATTCTTTGACTTTGAAAACATTGCTGTAAATCAGATATATAACCTTCAATGCTGAATGTGAATAATTGTTCTATATTTCTAAAGGTTTACAAATGCTGTTTACaactttgtattaatgttttgaatgaCTAAAATGACATAAACATGGTTGCAGCTATTTAAGTGAACTGTAAGGGGAGCAGGTGATTATATGGGAGAAGGTTCAAAAGGCATTTGTCAAAGGTGTCAATGGCTGTGTTTTCATGTGAATATTGTGCTTTAAGTGAcaaattttaaattacagcagGTGCTTAACATTTTTGTCCTGGTGGGTTTGTTGTAATTTTTAGGGACTGCATTGGTATTGAAGTTCTCCAGTTGtcatgttattttgtgttttcagatcACATTATCATGGAAGTAGGCAATATTCAGAGCATGTCAGACTTTCGCTAAGGCTAAGCCATACTCGGAGTAATACCGCATGCCCATCTAGACAAAAAGGATAGGTGCTTGTCTCTGTACCCCTGCTCTTGTAATGCAGCCTATTGTCACTTAAGTTATAGAtttgtcactttttttcttcctcagtgAGATGTTTTCCTGTTACTCTTCCTGCACCttgagatttaaaatgtgtggttaTGCCCCGGGTTTCACATGACAGTTAGGCTATTCTCAgttgtttgtttcaaattgaTCTCAATTTAATATGTGACCTAAGGCCTCTTGTTTGAAGACCCAGGGAAGAGATGCATGTTTACACATACAAGTGAAAATTTcataaaagattaaacaatttttaaaaccatg

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004760 True 4213 mRNA 0.43 12 677866 688451

Neighbor

gene id symbol gene type direction distance location
AMCG00004762 NA coding downstream 3991 663525 ~ 673875 (-)
AMCG00004761 NA coding downstream 93421 560125 ~ 584445 (-)
AMCG00004753 NA coding downstream 232387 437974 ~ 445479 (-)
AMCG00004754 NA coding downstream 243679 425272 ~ 434187 (-)
AMCG00004755 NA coding downstream 255340 415362 ~ 422526 (-)
AMCG00004765 NA coding upstream 104578 793029 ~ 799872 (-)
AMCG00004764 NA coding upstream 145440 833891 ~ 835155 (-)
AMCG00004766 NA coding upstream 147791 836242 ~ 858506 (-)
AMCG00004767 NA coding upstream 185425 873876 ~ 945686 (-)
AMCG00004770 NA coding upstream 312085 1000536 ~ 1001328 (-)
G142828 NA non-coding downstream 326239 307116 ~ 351627 (-)
G142766 NA non-coding downstream 567374 109264 ~ 110492 (-)
G142765 osbpl9 non-coding downstream 568655 105040 ~ 109211 (-)
G142890 NA non-coding upstream 15839 704290 ~ 705016 (-)
G142891 NA non-coding upstream 44033 732484 ~ 732959 (-)
G142902 NA non-coding upstream 91967 780418 ~ 782340 (-)
G142920 NA non-coding upstream 100651 789102 ~ 792949 (-)
G142953 NA non-coding upstream 481562 1170013 ~ 1170516 (-)
AMCG00004763 LOC107393006 other downstream 31255 644004 ~ 646611 (-)
G142773 NA other downstream 547163 127778 ~ 130703 (-)
G142770 NA other downstream 555339 119695 ~ 122527 (-)
G143145 NA other upstream 2021103 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2431778 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3420631 4109082 ~ 4116414 (-)
G143659 NA other upstream 5048358 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 7665538 8353989 ~ 8377001 (-)

Expression


Co-expression Network