AMCG00004763 (LOC107393006)


Basic Information

Item Value
gene id AMCG00004763
gene name LOC107393006
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 644004 ~ 646611 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004763
ttttggcGATATCCCATGATCCAAAGCTCCAATCATAAAGCAGTTAGCAGTTTTGGAAACTTAATAAATAGTCCCCTATCTTTGCGGCACAAcgcagataataataaaatgcagagcAAATCTACTAATGCCAGTTTTTCGTGCAAAATCTGAAAGAGCCCGGATAAAAAgtagaaagtgtttttctttgtttccctcCAGGTTGAGATTAGTGTGACACCAGAGGCGCTAGTGAGTCGGCGCGGAGCTGAAGTTGTTGATTCTTGTAAAACTGGGCTTTGGTGGCGTGTAGCTTCGAAGAAAGATGTACAAAAGCATCCTAGCAAGGTATTGGGAGTGCATAGAAAAGGTGCGAAGGGGCGGAGGCGAGAATGCCATCGCTAGGCACACGCAGAGGAACAAGAAGCTCCTGGTCCGGGAGAGACTGCGGCTTCTATTGGACGATGAGGATTACCTGGAGCTGTCACCCTTTGCAGGGCTGGATTTGCCTTACGGGAACGTGCCATCAGCA
>TU179730
TGAGTCGGCGCGGAGCTGAAGTTGTTGATTCTTGTAAAACTGGGCTTTGGTGGCGTGTAGCTTCGAAGAAAGATGTACAAAAGCATCCTAGCAAGAAGTCTGCGGACAGAGGCGAGACTGATTCAAGGATTGATCTCTTCGTCTTCCGAAACAACGAACTCAAAGCCCTTGAACAACAGCACCGCGAAATGCAGAAGACAGCACTGCACACGGACATGGCGCCCGGCCGCCCCCCGGCCGCAGAGTTTAAAACGGGCAGCGGAGAGACAGCAGCGCCAGATACCGCAGTGTTTTATTAGCTCTGTGCCGACGAGGAAGAAGACCTTGCCCTGCGCCTTTCCAGTTTTAGAGCAAGACGTTCAGCCAATCCATAGGCATGTTTATGAGGCAAACGCACGCAACAGCGCAGTTTGTTATCAAAGGTATTGGGAGTGCATAGAAAAGGTGCGAAGGGGCGGAGGCGAGAATGCCATCGCTAGGCACACGCAGAGGAACAAGAAGCTCCTGGTCCGGGAGAGACTGCGGCTTCTATTGGACGATGAGGATTACCTGGAGCTGTCACCCTTTGCAGGGCTGGATTTGCCTTACGGGAACGTGCCATCAGCAGGGTGTATTACGGGCATTGGTAAAATCTGCGGCTTGTGGTGTGTCTTTATTGCCAATGATGCCACCATAAAAGGCGGTACAGCTTATCCCATTTCTGTGAAGAAGCAGCTGAGAGCCCAAGATGTAGCTGTGCAGAACCGTCTACCTTGCGTGTATTTAGTGGACAGTGGAGGCGCATTCTTACCTCTTcagg

Function

NR:

description
PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004763 False 511 mRNA 0.47 2 644608 646611
TU179730 True 799 TUCP 0.52 4 644004 646379

Neighbor

gene id symbol gene type direction distance location
AMCG00004761 NA coding downstream 59559 560125 ~ 584445 (-)
AMCG00004753 NA coding downstream 198525 437974 ~ 445479 (-)
AMCG00004754 NA coding downstream 209817 425272 ~ 434187 (-)
AMCG00004755 NA coding downstream 221478 415362 ~ 422526 (-)
AMCG00004756 NA coding downstream 241962 377118 ~ 402042 (-)
AMCG00004762 NA coding upstream 16914 663525 ~ 673875 (-)
AMCG00004760 NA coding upstream 31255 677866 ~ 688451 (-)
AMCG00004765 NA coding upstream 146418 793029 ~ 799872 (-)
AMCG00004764 NA coding upstream 187280 833891 ~ 835155 (-)
AMCG00004766 NA coding upstream 189631 836242 ~ 858506 (-)
G142828 NA non-coding downstream 292377 307116 ~ 351627 (-)
G142766 NA non-coding downstream 533512 109264 ~ 110492 (-)
G142765 osbpl9 non-coding downstream 534793 105040 ~ 109211 (-)
G142890 NA non-coding upstream 57679 704290 ~ 705016 (-)
G142891 NA non-coding upstream 85873 732484 ~ 732959 (-)
G142902 NA non-coding upstream 133807 780418 ~ 782340 (-)
G142920 NA non-coding upstream 142491 789102 ~ 792949 (-)
G142953 NA non-coding upstream 523402 1170013 ~ 1170516 (-)
G142773 NA other downstream 513301 127778 ~ 130703 (-)
G142770 NA other downstream 521477 119695 ~ 122527 (-)
G143145 NA other upstream 2062943 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2473618 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3462471 4109082 ~ 4116414 (-)
G143659 NA other upstream 5090198 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 7707378 8353989 ~ 8377001 (-)

Expression


Co-expression Network