AMCG00004766


Basic Information

Item Value
gene id AMCG00004766
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 836242 ~ 858506 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004766
GCAAAATGGATGTGGAGCACATCATAACCAAGAAAATGCAGCTCAAGATGAAAGCTGAGCATCTAAAGATGGACCTGATGAAGCACTTTGACTGCCAAGTGAACGAGTTTGTGGACAATCTGATCGAGGAGTCGGCCGGCCTGGAGTCTCCCTCTGTGCCCTCTGTGTTCTCTGCACAGCTGACTGAGAAAGAGAGGAACAAACTGAgGCATCTGCGATCCTCCCCGGATCATGGCAAGCTGTTTGTGACCCGCCGCTCCTTGTTAGAcGAGCTTTTTGAAATCAATCACATTCGAACCATCTACCACATGTTCATCGCTCTGCTCATCCTCTTCATCATCAGCACCCTGGCCATGGACTTCATCGATGAAGGACGcctaGTGCTGGAGTTTGACCTGCTGGTGTTCGCCTTCGGCCAGTTTCCCCTGGTTGTGTCCACATGGCTGTGCATGTTCCTGTCTGCGTTCATCGTGCCGTATGGCCTGTTCCACCTCTGGGCCCGACACTACCGCTCCTCCCGGCACCCCCGCCTGCGCTCGCTGCTGGCCGGCTCCCTCTTCCTGCTCTTCCAGGTGCTGGGCCTGGGCTTCCTGCCCACCTATGTGGTGCTGAAGAACGGGTTACCGCCTGCTTCACGCTTCATCGTCATCCTGGAGCAGgtTCGCCTCATCATGAAAGCCCATTCGTTCATCAGGGAGAATGTGCCCAGAGTGCTCTCCTCCACCAAGGAGAAGAACAGCTCCCTGCCGATCCCCCAGGTGTCTCAGTACCTCTACTTCCTATTTGCACCAACGCTCATCTACAGAGACCACTATCCCAGGAACCCGTCGATTAGATGGGGGTATGTGGCAACCAAATTCTTACAGGTGCTGGGCTGCCTGTTCTATGCCTACTACGTGTTTGTACGCCTCTGCATCCCTCAGTTCAGGAACGTGAGCCTACAGCCATTCAACCTGAAGGATTGGTGGAACTCAACATCTTTTGCCAATTACTACCGAACCTGGAACGTCGTGGTTCACGATTGGCTGTATTACTACGCCTACCGGGACTTCCTCTGGTTGTCAGGGAAGAGGTTCCGCGCGGCTGCCATGCTGTCCGTGTTCACCGTGTCTGCTGTGGTCCATGAGTACGCACTGGCCATCTGCTTTGGCTTCTTCTACCCCGTTCTCTTCTGCATGTTTATGTGCTTCGGAATGATGTTTAACTTCATCCTACATGACCGGAGGAAAGGACCCATCTGGAATATCATCATGTGGACCTCCTTGTTCTTGGGGCAGGGCGTGCTGCTGTGTCTGTACTCCCAGGAGTGGTATGCCCAGCGCTACTGCCCGATACAGAACCCCTGCTTCTTGGACCTGCTGAAGCCACGATCCTGGATTTGCAACCAACAAGTATCGTTGACTGGACCCGCCGACTGAACCACCGGATCCAGTCCGCTTTTATGAACCAAATGAatgtgatgttttcttttatactttttcttttttttttttcttccccccctttcctttgtgttctgttttgccTTCTCATGATTTACCACCTTGTGCCTGGACTTCACTGAGAGGGACTCCGACCCTCTGCCTGGACGCTGTCCAAACACCTGTTTAGCAACTCCGTGCTCTCTTGTCCCAGagttttcaaaaggaaaagcaaGTTGCTCCCACAGCCTATTGCAGGGGGACAGAAACCTTGCATCGAAGTATTATGTGACTCTTTGGGGGTACGGGCATTCCACTCGGATCCGCTTTGGGTCACAGTACCATTCTGTCCTCCTCTATAAACTGGGGCTGAAAGTCACcttttaaacctttatttttatttaattttaatattccaATTAGAGATTAGGTCCCTAACCTAATGATGTCGATGACCGTGCTGTTCTATATGTGCGTATACCCCATGGTTTGTGGCTCTTGAACATTCCTGCGCTCTCTGTCACCCCGGTTTCATAGTCCCTCGCATTCCCGCTCAAGACCAGGGGCAGTATTGGAGATCAGATTCCTCCTACGCACAGTTCTACGTTGGGACATGATGCGTCTGTCTCTTTTTGCGTGACGAGTGAATTACAGTCACTCGTGAAAGGAAACGAATGCCGAATTCAGAAAATGAAACCACAGATCAGTTGGAGCCAGTGCGCATTGTAAAAGTCAGTCTGTCCGATGATGGCTAGTTTAAAGAGACTTCTAATGTCCAGTATTTCTACTTTGTTCTGACTACatctaagatttttttttttttttttttccccccaagacAAGGAAGACGACCTTCACGCCCTTTCAGTTGGGATACACTGTATACATGGGGGAAACTCTAGCAGTAGGCTGGTCCACAGGTgtactgtttaaaaatgaaccTGTGTGTCATGGATTCTGGTAATATCAGTCATATTATCCTTATTGCCTCTCAGTCAAGTCATTTAAAACTTTGCTGATGTTTTCTGTGAACTAATGTGCATACATCTACTGCGTTTGTAGTCCTGTAATCCTTTGAGGCTCCACCTACTCCTGTTTTTGCAGTATCGTCTGGTCTCTGGGATCAGGGCTGTTGGAAGTGTAATACCGATGTACTTTGATGAATGTAAGTTTGTGTATGAAGCAGCTATTTACcagaccccccctccccccaggcTCAGACACCGATGGGATCAGACTTTGTTGTCCCATTACCACCTACCGCTGGCAAATGAGGTTCACTGCTCCTCCACTGCAGAGAGCAACTGCGGCCAGAAACGGGCAGATACTGGGGCGATCATCGTGACCCTCTTTTTCTCAATCACATGTCACTTTTAATCCATTCTGGTCAGATGAGAATGTGTTGCTGTAGGCAGTGAATATAATCCCACGATACTAGCCTACTGCACAGATTCAAAAATATTATAcctcaatataaatatatgaattaattcCATTTTACAATTATGACTGTAGGGTTTAAACTGAGGGTCTGCTTACACAGCATTAATGTTGCACTGTGGTGCATTGAAAAACTCAGACTGCTTTGTGTGGCTTCCGGGGGCAGGTGGAGAAACTCAGTGGCTGAACCAGGGGAGAGGGAAGGGCAACATACAAACCAGGGAGGATCTCTTATACTTTGCTCCAAAGTGTCTTGCGTCCTTTAGAAGTGTGCAATTCTGTATGTGTATCCTAGTTCTCTGGCAGGTGTTAATACAGCTGCAGCTGGCTGCAGATACTTTACAAAATAGAACATGTTTATGATCGACACCTACCGAGAACTGTGCCAAAATGCTTAGCTAATTTCTGTTTAGATGTTGGCACTCGTTTGGGGCAATAGATCAATAGATTGCAATGTTTCCTGTATGTAAGGATTTAAGACTTTCTGAAATCTAAAGAAGGCAATTGAATGGCACTGTTGAAGGGACCAAACCTATCATACACAGAGGGtacatattacaaatactgCAATCATGCTGTAAGTCCGTAAGAAGAGACCTGTAGTGTCTGTCCATCATGCACATCATCACTACAGCCTTTAATGAGCAGAAACCTGAGGTTAGATGTTAGAAACCGTTTTATGTTTGGGGCCAAAAACCTATAGCAGTGATTTGTGGGAGGGTGATGGCCTTGCTCTGGTGAATACTTGTTTAAACGTAAGGTGGGGGtgaagtgcaaaaaaaaaaaaaaaaaaaaatgcatttaagtttAAATGTGTTGGCTTTGTGCTTTACTCAAGAGCCATTGAATGTCTTGTGATTTAGTGTCAATCAAACGAGGGCTTATTGGAAAACAAGGTGTCTTTGTATGTTTCAAAGGTTGaggttgttattgttattgttgttattattattattattattattattattattattattattattaataatattaatattgtggtggtggtggtgttgaaTCCTACCCCCATCGCCTCCTTTGCTCAGTGTGAATAAGCACAAAGAGTCCTAAAGCAATGCAATAGACTTTTGTTGTCCAAAACCAGCATCAAAGTGTGTTCACTGTAGATACAATATGAAGTGCCCTAGTCCTCGGGCAGGTCTGGTGCAAAAGGGTTTTGTCTTTCGTGATTATTCGATTTTATTAATGCAGATAGAATCTATGGAGGCAGAAACTTTAAAGCATTtcataaagaatgaaaaatcagttttccacaaaatgtaaattgacGGTGTGATGGgaaatataaatctatatattttcatatgaatattatatatgGGGGAAGGTATCCTTATCAAACGTACTGATACCTACTCTACTATTTACtatgaaagtgctttgaaataaaaCGGGAATACAAGTTGTAACACATTCAAGTAAACTACTGGAAAAATGTGATCACATGTGGGCATAGCCACTGTATAAAATATGAAGGTTGAAATTGTGACtgttacactttttttgttgtgttacaaaatatgtacttttttaaCTTGCATTCCATACTTATGTTGTGATTTGtaacctgtaatttaaaacaaatctgtatattGCACTGTTTTGCTAATTTTGTTTTGGAGGTATTTGGAACAGATCAATTCCCTTCTATATTCATGTGTATACAGTACTACAATAAAGCTTAGCATTACCCGTTTAATAGTA

Function

GO: NA

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004766 True 4589 mRNA 0.44 13 836242 858506

Neighbor

gene id symbol gene type direction distance location
AMCG00004764 NA coding downstream 1087 833891 ~ 835155 (-)
AMCG00004765 NA coding downstream 36370 793029 ~ 799872 (-)
AMCG00004760 NA coding downstream 147791 677866 ~ 688451 (-)
AMCG00004762 NA coding downstream 162367 663525 ~ 673875 (-)
AMCG00004761 NA coding downstream 251797 560125 ~ 584445 (-)
AMCG00004767 NA coding upstream 15370 873876 ~ 945686 (-)
AMCG00004770 NA coding upstream 142030 1000536 ~ 1001328 (-)
AMCG00004769 LOC106613910 coding upstream 155838 1014344 ~ 1071694 (-)
AMCG00004772 NA coding upstream 215944 1074450 ~ 1108517 (-)
AMCG00004771 LOC107700326,LOC107562853,LOC107671548,LOC106613910,LOC108436878 coding upstream 283854 1142360 ~ 1150290 (-)
G142920 NA non-coding downstream 43293 789102 ~ 792949 (-)
G142902 NA non-coding downstream 53902 780418 ~ 782340 (-)
G142891 NA non-coding downstream 103283 732484 ~ 732959 (-)
G142890 NA non-coding downstream 131226 704290 ~ 705016 (-)
G142828 NA non-coding downstream 484615 307116 ~ 351627 (-)
G142953 NA non-coding upstream 311507 1170013 ~ 1170516 (-)
G142959 NA non-coding upstream 431158 1289664 ~ 1289985 (-)
G142967 NA non-coding upstream 521374 1379880 ~ 1380879 (-)
G142972 NA non-coding upstream 527917 1386423 ~ 1386687 (-)
G142990 NA non-coding upstream 669072 1527578 ~ 1527810 (-)
AMCG00004763 LOC107393006 other downstream 189631 644004 ~ 646611 (-)
G142773 NA other downstream 705539 127778 ~ 130703 (-)
G142770 NA other downstream 713715 119695 ~ 122527 (-)
G143145 NA other upstream 1851048 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2261723 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3250576 4109082 ~ 4116414 (-)
G143659 NA other upstream 4878303 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 7495483 8353989 ~ 8377001 (-)

Expression


Co-expression Network