AMCG00004775


Basic Information

Item Value
gene id AMCG00004775
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1435263 ~ 1457250 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004775
AGAGCTGATACTGTAGCTGCTGACATGAATCTGGGAACGGTCCTGTCCTCTACCACTCCGGCTCCAGAAACAAAAGGGGAACTTGCCTTGGAGACCCCAGATATTGTGGTCGTTGTCATATACTTTGTCTTAGTCATCACAGTGGGGATATGGTCTTCATTCAGGGCCAACCGCGGGACAATCGGAGGATATTTCCTGGCTGGGAGGTCGATGACATGGTGGCCTGTGAGAGGCTTGTCAGCAGTTATCTACACAGATGCCTTGCAGACTGTCATCATGGTAGTGGGAGCATTTGTCCTGATGTTTATAGGTTTTGATAGAGTGGGCTGGTATGAGGGTCTCCTGGAGAAGTACAAGGGAGCAGTGCCTGCCCTCACGGTGCCCAACACCTCCTGCCACCTTCCCCGCAGTGACGCCTTCCACATGTTTCGAGACCCAGTGACAGGAGACCTGCCCTGGCCAGGCCTGATCTTTGGACTCACCATATTGGCAACATGGTGCTGGTGCACCGACCAGGTGATCGTTCAGAGGTCTCTCTCTGCCAAGAACCTGTCCCATGCCAAGGGGGGCTCAGTGCTGGGAGGCTACCTGAAAGTTCTGCCCATGTTCTTCATCGTCATGCCTGGAATGATCAGCAGGGCACTCTTCCCAGCGTGCAAGAGAATTTGTGGGGTTGAGGTGGGCTGCTCAAACATAGCCTACCCCAAACTGGTTGTGGAACTCATGCCAGTAGGTCTGCGGGGGCTAATGATCGCAGTGATGATGGCTGCCCTCATGTCCTCCCTCACTTCCATcttcaacagcagcagcacactcTTCACCATGGACATCTGGCAGAGGGTCCGTCGGCAAGCCTCTGAGCATGAACTCATGGTCGTGGGCAGgGTGTTCATTGTGGTGCTGGTGGCTGTCAGTATCTTGTGGATTCCCATCATCCAGACATCCAACAGTGGGCAGCTGTTCGACTATATCCAGTCCATCACCAGCTACTTGGCGCCGCCCATCACAGCCCTCTTCATCATGGCAGTGTTCTGGAAGCGTGTCAATGAGCCAGGAGCCTTTTGGGGCCTAATGGTGGGCCTTGTCATCGGCTTCATCAGGATGATCCTGGAGTTCATGTACACAGCACCCTCCTGTGGCAAGGAGGACACTCGGCCTTTCCTCTTGAAGGATGTCCACTACCTGTACTTTGCCCTGATCTTGCTCGCTATCACTGCTCTAGTCATTGGCATAGTGAGTCTGTGCACTCCTGCCATCCACAACCAGCATCTTGTTCGACTGACCTGGTGGACAAGACACAGCCAAGAGCCCCGTGTTGACCTTGGTGACCTTTGGGCAGAGCCTGCTGTGCCTGACCCCACAAAGACCCCCTCAGAAGTGGAGTGTCCTTCACCAGCAGGGCTGTGGTTTTGTGGCCTCTCTGGTGATGTCCGCCCTCAGCTCAGCCTTGAGGAGAGTCAGGCTTTGGAGAAGAAGTTGACCAGTATCACTGAGGAGCCAGTGTGGAGGAACGTGTGTAATATCAATGCCATCATCCTGCTGACTATCAATGTCTTCTTGTGGGGCTTCTTTGCCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004775 True 1578 mRNA 0.54 11 1435263 1457250

Neighbor

gene id symbol gene type direction distance location
AMCG00004776 NA coding upstream 3453 1429518 ~ 1431810 (+)
AMCG00004774 NA coding upstream 28016 1406999 ~ 1407247 (+)
AMCG00004758 NA coding upstream 775474 650702 ~ 659789 (+)
AMCG00004757 LOC107707585,LOC107599011,LOC107657879 coding upstream 877982 539775 ~ 557281 (+)
AMCG00004759 NA coding upstream 927437 479846 ~ 507826 (+)
AMCG00004782 elavl4,LOC106613894 coding downstream 1033204 2490454 ~ 2490690 (+)
AMCG00004783 elavl4,LOC107657884,LOC106613894 coding downstream 1091357 2548607 ~ 2558673 (+)
AMCG00004784 NA coding downstream 1495061 2952311 ~ 2952624 (+)
AMCG00004786 NA coding downstream 1540756 2998006 ~ 3002925 (+)
AMCG00004791 calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980 coding downstream 1794720 3251970 ~ 3262480 (+)
G142973 NA non-coding upstream 23056 1411957 ~ 1412207 (+)
G142958 NA non-coding upstream 145278 1289709 ~ 1289985 (+)
G142910 NA non-coding upstream 642320 789038 ~ 792943 (+)
G142881 rpe65,LOC107708597,LOC107657893 non-coding upstream 733505 667957 ~ 701758 (+)
G142847 NA non-coding upstream 865120 566383 ~ 570143 (+)
G143029 NA non-coding downstream 802479 2259729 ~ 2308874 (+)
G143074 NA non-coding downstream 1102067 2559317 ~ 2562389 (+)
G143107 NA non-coding downstream 1224054 2681304 ~ 2681548 (+)
G143109 LOC103376870 non-coding downstream 1263048 2720298 ~ 2761630 (+)
G143166 NA non-coding downstream 1627122 3084372 ~ 3086394 (+)
AMCG00004749 NA other upstream 1312298 116491 ~ 122965 (+)
G143075 elavl4,LOC106613894,LOC103028496 other downstream 983291 2440541 ~ 2559080 (+)
AMCG00004788 NA other downstream 1665831 3123081 ~ 3160209 (+)
AMCG00004793 NA other downstream 1920565 3377815 ~ 3395158 (+)
G143366 NA other downstream 2492176 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 2651772 4109022 ~ 4109655 (+)

Expression


Co-expression Network