AMCG00004776


Basic Information

Item Value
gene id AMCG00004776
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1429518 ~ 1431810 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004776
ATGGCTTTACACAGAACGTTTAATGCGCCAACATTCCTGAGGTCTTTGCCTGCTGCCTGCGCTTTCCACTCCACTCCTGTTGTACAAAATGCCAACCGAGTGTCTATCGTGCGCTGTGCCAGGCAGACCTATACTTGTAATTACCCCGTCCTGCTGGTGAGACCTGATGGCTCCACTATCCACATCCGGTATAAGGAACCCAGGAGGATACTGATGAAAAGGGACCCCAGGAAGACAGCATCCAGAACAGATCAGGATGAGTTTGAAGACGACTTCAAAACAGATGATTACAGCCAGTTCTGGAAGAAGTAA

Function

GO: NA

KEGG:

id description
K17436 MRPL55; large subunit ribosomal protein L55

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004776 True 312 mRNA 0.49 3 1429518 1431810

Neighbor

gene id symbol gene type direction distance location
AMCG00004774 NA coding upstream 22271 1406999 ~ 1407247 (+)
AMCG00004758 NA coding upstream 769729 650702 ~ 659789 (+)
AMCG00004757 LOC107707585,LOC107599011,LOC107657879 coding upstream 872237 539775 ~ 557281 (+)
AMCG00004759 NA coding upstream 921692 479846 ~ 507826 (+)
AMCG00004746 NA coding upstream 1291265 134381 ~ 138253 (+)
AMCG00004775 NA coding downstream 3453 1435263 ~ 1457250 (+)
AMCG00004782 elavl4,LOC106613894 coding downstream 1058644 2490454 ~ 2490690 (+)
AMCG00004783 elavl4,LOC107657884,LOC106613894 coding downstream 1116797 2548607 ~ 2558673 (+)
AMCG00004784 NA coding downstream 1520501 2952311 ~ 2952624 (+)
AMCG00004786 NA coding downstream 1566196 2998006 ~ 3002925 (+)
G142973 NA non-coding upstream 17311 1411957 ~ 1412207 (+)
G142958 NA non-coding upstream 139533 1289709 ~ 1289985 (+)
G142910 NA non-coding upstream 636575 789038 ~ 792943 (+)
G142881 rpe65,LOC107708597,LOC107657893 non-coding upstream 727760 667957 ~ 701758 (+)
G142847 NA non-coding upstream 859375 566383 ~ 570143 (+)
G143029 NA non-coding downstream 827919 2259729 ~ 2308874 (+)
G143074 NA non-coding downstream 1127507 2559317 ~ 2562389 (+)
G143107 NA non-coding downstream 1249494 2681304 ~ 2681548 (+)
G143109 LOC103376870 non-coding downstream 1288488 2720298 ~ 2761630 (+)
G143166 NA non-coding downstream 1652562 3084372 ~ 3086394 (+)
AMCG00004749 NA other upstream 1306553 116491 ~ 122965 (+)
G143075 elavl4,LOC106613894,LOC103028496 other downstream 1008731 2440541 ~ 2559080 (+)
AMCG00004788 NA other downstream 1691271 3123081 ~ 3160209 (+)
AMCG00004793 NA other downstream 1946005 3377815 ~ 3395158 (+)
G143366 NA other downstream 2517616 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 2677212 4109022 ~ 4109655 (+)

Expression


Co-expression Network