AMCG00004777 (bend5,LOC106584333)


Basic Information

Item Value
gene id AMCG00004777
gene name bend5,LOC106584333
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1691028 ~ 1718262 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004777
CTTTcccctttgtgtgtgtttatattttttatacttaCATAGAGGGGAATCTATTAACCATATCTAAAGTGAAGGACCAAAGAAGAAATAATGTATGCTTTCGTGAGGTTCTTGGAAGACGACGTGTGCTACGCTTTGCCGGTTTCCAACGTGAAAGATTTCAGACCTCTCCACAAGACAGATTTTGATAATCAGAAGGTGTATTTGGTTCACAGAACAGAGGGGACTGGCACAGGCCAACCTGGCAAAGCACAGATACTGGCACTTGCAGAAAACATACAAGAGTTTGAACACAGTATTATGCAGAAGAAGATGAAAATTCCCAAACTGTCCACAAATGCTGTAGAAAATTCTGTGGAGAATCATTTTGGAGAGGAGCTTTTGCCACTCAAGCACAAAAAGGTACAAGATCATGGGTGCTCCACTGCCAACTCCTCTAAAAGCCTGGCTGCCGTGGTAGCAAGGCTGGAGAAGAATGCGATGAGCTCTTGTGCAGAGGGCGAGGAGGACTACGAAGACAGCCTGGTGGAGGACTCGGGGCCTGAGGAGGCCGTGGTCCCCAGGGTTTTGTACGAGGAGCTGGTGCACAGCTACAGGCAGCAGGAAGAGGAGATGCGCCGCCTCCAGCAGGAACTGGAGCGCACACGCAGGCAACTAGTGCAACAGGCCAAGAAGCTGAAGGAGTACGGCAGCTTGCTGACAGAGGTCAAGGAGCTCAGAGACTTCAACAGGAGGCTGCAGGATGTTCTGCTCATGAGGCTTGGCAGCGAGCCTATGCATGACAATGGCACTCAGACAATCAAGGCGGAAGTTGTGGAGCCTATTATAGAGCCACAGGAAGTATGTCGGGAAGAAGCAAACACCAGCTCCAGCCATTCGCCCTCTCTCAGAACTGTATACACTTTCAATGATGGCAAGgTGCATCTAGGAGGGGGGATTTGGGTAGAGGAGGAGAAATGGTATCAGTTGCAACGCACACAAGGAGACTCCAAGTTCACCAAAAATCTAGCGGTCATGATTTGGGGCACAGAGACTCTGAAGAACAGGAGCGTCACTGGGGTggccacaaaaaagaaaaaagacgcCTTGCCCaagccccctctctccccaAGCAAACTCAAAATCGTCAGAGaatGTCTGTATGACAGAGTATCACAAGAAACAGCAGACAGTGCAGAGATCACACAAAGATTGTCCAAAGTGAACAAATACATCTGTGAAAAGATAATGGATATCAACAAATCTATCAAGAATGAGGAACGGCGAGAGTCAAAGCTACTGATTAGACAGACAGTCAAAATGGAAAATTTCAATTACGATGGCATGTAGTGATTAAAAGTTGTCACCATAGCTTGTTCTATTCCTTATGGAATGACTAAGAGGAAAAGGGTGGACAATATCGTTCCTTCTGCCATTTGTGATTTTGCAAGAGCCCAAGAGGCTTTTCATGCAATACAAACCAGTGCCTGTGAGACAGCCTTGGTATTTGATGGCATGTCATTCATTGATATGACTGATGTGACAGTAAGTGGCTGggtggcattttgttttaagaatgtaGGATGAAAGACGACTTTGATGGGAGGAATGACTGTAGAGTGCAAACCTTGCACGTGGCTGAGATATAAATGAGACCTTGCATCCCGGAGCACTTCAGAGAAGTATACATATCTTCAGCATAggttttctgatttaaaaaaaacctttaacTAATGTTTTATACTATAAAGTGGGGATGTCTTACTATACAAATACCATCTGGGAATGCTATGTTTAAGACAACACAGCTCTAGGTAGAATGATTTAGGAATGCACTACTTCAGTCAGTTTTATCACACATTTATGTCTTTTAGTCTTTGATTTCCATAGCACCTTTAATAACATATAGTTAACATGACCTACTTCTACATAGCTCTATTCATACAGCGGAATTATTACAACTCAAAGTTACATAAGAGTACAGTTCACCTAAAGCTGTAAAAGCATTggaaatgcattacaatatcTTCATAATTGCAATAATTCTGGAAACCAAGTTCTATTTAATTAACAACTTAATACATTGAAACAATGACATAAAAAGACAAACtacctacttttttttttcttattcttctcatgtgcaaattaatttattttaataagatatTTCACCATGGGCTGCTGTGACATGCTCTAGTGACAAAGCCTGCTCTAACTGCATGTTGAGCTCTAAATCCAGACAGTGCTGGTACTAAATAATAGTAGTAAAAATCCTGTATGACTCTAACCAGGATTCCTTACGGGGGGGGCATACAACTGACCAATGCCAGGTGGAGTTGTGTGGGCTTGAGTCAGCCAGGGTTTCTTCTTATTGATATCCACAAGTGACTCCTGTGTCTTGCCAGTCACTGGTGAACCCTTCAGTGGgatcagtgagagctgcatcagTCCTCTGCTGTTTGCCCTGTTCtcacagtgtgaaaagaaaCTGTTGGCTTAGCAGCATGTGTGTCAGCTCTCTACGCGGTGCTGATTCGAGCGGAGTAACAAATGGTTTTCTTattagaaaaaacatatatatgtgacAATATATATAACAGATGGGAACTTTAGAATTCATGTTTTAAGACAGTACATCattttcagaaactgcacaCTACCTGTACAATTTAGGGACAAGAATTGTGGTTCTACTATTGCAGctgataaagtaaataaataagtaaataaaaagcatcCAAAGACAATTCAGTCAAatattgacatttgtttttgtctataATTTTGTCAGTTGCATTAGCCATGGGAACAATCTATGTAATAACCTTCACGGTTAGTCTCTTATTTTACTTTGCCCTACGTAAAAGTTTTTTCACAGTATTACAGTGGCATAAATTCATTAACTTTGTGCTGTTTGgatgcttttttcattttaacatctCTGACACAGTCTGCATTTCTTGGTGAACCAGACTTTTTGGGTCTTAGTTTAATGTACAAGCTGCTCCTGTGATTCGGACcatagatgtttatttttgctgtttggTATCCAGATCTTCAGTAAGGGAGCAATAAATATGCGTCACTTGAAAATCCAGATTAACTCAATACTGTGAAACATTTTGCTCACAATCTGCCACAAATAAGAATTGCAGCCTGAAATAAAGTATGGTATTCTTGCTTGCCTTCTTAGGCTTTCATAAGGGGCTTCTCCATGGCCACCACTTTCAATCAGATTGGATTCAAATCACCTTCAGTCTGTGAAATTAATAACTTGAGACTAGctgaatttttcatttcataacaAATACATCTTGATAATTGAACAAAAAGCATTAAGGTGTGagttcaaaactgttttttttgtttgtttttttaaacacatttttattctaGTTGACggtgattttaaatatttgatcttGAGGTGCAGCAGATTGTTCGACAACTaagaaatatgtgtttttcagGTGTATGCCATGAACCAGACTTTGACTCTAATTAAGCTTGATCTAGTTTAACACAGCTGTTTTTCTACCACTTTGAGAGCTACCAGGGCTTTTGTCAGATGGCTTGTAATGCTCTAGGCACAAGTTGGTCCTGCGTGGCAATGTGCCTCTTTCAATACCTCAAGTGGCAGAATCAAGAGTTCGTCCTTCTTCCAGCAGGCATGCCATTTAGAATAAAGTAAGGTATAGTGACAACTTCTAACAAGACATGCCACCAAAActttttaaagtgcttttttttagGGGCTGACTGGCTGTCTGCAATAGAGAACTAAATGCTGCGGATTAAATTCTGAACTATGACCGCATTTCTAACTGTGATCATCCTGCAGGTCTGGCTTTCAAgcggatttttttttttctttcttctcctctcctctccttgcTGTTATTGGATCCTTATCACTTTTAAAGATTTTGGTTactgtgtatataatttatattatcagttttttgttttgttttttaatgtaggGAAATTTAAATTTTAGTCCAATTACACCCCTCCTATTTTATAAaatggttatttttgtttttttgtttgtttccctccTTTTTCTCCACCCCACACATTCACTGGTTGTGATATATCAGTGCTATGTGTtatcctgtgtgtttgtttcacatttGCAAATAGATCTCCTCTTTAATTGGCCTGCCACTATTAACAAcaggtaaaattaaataacttgaatcATCAATATGTGGAGATTTAACCAGTTGGTTAAGGACTTTACGCAGTTCCATAATGGAATGCTTTGTTGATAAGAACCATTATTATAAATGTCTTAATGGCCTCACTGCGGTAATAATTGCTCTCAGCAATATGCATcatggagaaaaaacaaaaacaactttggGGATTGAATCCCTTCACTTGAAATATGCTTTGTAGTGGGTTATTCATAGTCAAACCAAagttttatttatagatgtgtgtgtgtgtgtgtgtctatatatatatgattttagcCATTATCGTAATATTGCACCAGACTGGTTTGGCTTTTCATTTATATTCTAGTGACTGACTACATGTGGATAATTTCTTCTGGCAAGCGGAAGAATCTAACTTCTGCAGGCAGCAGGAAGATGCCACATTTGGAAAATGGAATCCATTGTTAACTCCTCTAGTAATATATTattcctataataataatacacaattttaaGCATCTCCATGCAGTATTTATAAAACTTTGGTTTAACTTTGTCATTTTTAACCCAACTGAATTATTCTCCAATCGTGATGGAGAGGATTTTAAAGatgatatactgtattttaaacttaaaaactaGTGATGCTTATGGTGTCTATGTGTGCGATAAAGCACGTTAATTTTGACTGGAAATAGTGAGGATATGGTTTTGGGGAATGTATCTTTTTGGTTGATCTTGCTGTTACGACAAATTTTACCCCTTTCTATTCTCACTTAGTCTGCCATCCcagcacttgtttatttttctctcggGACTATTTCTGATCCCTAGAAAGGTTAGCAGATGTTTGAGGCCTAAATTGATAGTTTCTCtctagaaatacaaaaaagctttgttctgaGAATGTAGGCTTACATTGTTAGCTTGTTTTGAAATTTGAATCCTGGTTTACAAATGGCAGAATTTGGAAACAGGATGGGAAAACATGGAATTGTGGTAAAAGCACTTGTATATTCATAGTTTCCCAAAGGAAAGCTTGAATCTGgtgacaaatgtatacattattcatttccTGTCTTCAAattgaattcattttaatattgcttACGTGCAAAACATTTCAGGTATTAACTAactttattactattattagaaCCAGTACGAGTACTAGCTACAGTTTAATCTTGATgccacttgtttttttttttggcaattttGACAAGTTATAATTTTAACTTgatacaagaaaataattatgacaTCAGCTTTTTGACtagcaattacaaaatatttcttGCAATGGTGAAAAGTAGGTGAAACAAGGCGCATTAAGATGCTTGACAGTCATTTGAAaggcaaaacataaaaaggtgGACATCATATCTAGCACTTTATTGTATACACTCAGCACAGAAACAAAgcttaaaataacattgcacACATTATATAGCACCTTGAAGAAGATACCATGACTTGATCCAGctaaatataggctatatactACATTAATTTAACACTATTCATTATCAGTAGCAGAGGAGATGTTAAGAGGAAGtatattttgtccttaaaacacTGATCTCCattcctggtcctggagaacctGTGGGAACACAGGTTGGTTATTGATCAAGTCTCTCATTTCGCTCATTTCATATGCTCTGTTCCTTGAAGGACATttagcagttttttttcccaaattatCTCTCAATTTTTGAATTTATCTACTTaattgatgaaaatgaaatgcttcaGAGTCTGATTACATAAGTGATATACGTAGTGACCTGTAAAACCTGCTGGCCTGGGGCTTTCCATGGCCAGGACTAAGACTCCTGCCTTACTGGGTGCTGTGACTTATATCGGCAATTGGAGACAAATGGTGAATAATTTGCCACCAGATCATTTCTTTTGGTTTGCTGTACATTGTCCTGTTAGAGCATTTTGAGTATCTGATGTCACTGAACTGAGActgaaaactaaaaccaaagCTTCAGATGTTAATGTGAGCCATTTGTAAGAAGGATGGGGAGGATATTTCTGTGTTAACTTGCACAGTACAGTTGCACAGTAGTACCTGTAGAGGTCTGGGGCCATTTATCCAAGGACAAATTCTCTGCAGTTACCACAGTATGGTAGTATTGATTCTGCGGCTATTAAAATtctatgtttttcattattatttgactGGGACACTGCAGGGTCCCTAAAGTGAGacctattttgtgtgtgtgtgataaagaaaacaaaggtttATAGTGGCTATGTGTGTGCTTAAATGCTCTCTGGGCACTAGAGAGTTATTAGAAATAATATCTATTTGTCTTACCTGATGCCAAAAAGGGGGTAGGGTGTAGTCGATTTGAGTACGATGTGATATTTTTATATGAGGAGATCCTAGATAGAACACAAATGCCTACAATTTGTGATCCACGCAGTTTATAGGGATTTTATAAATCTGATGATGTCCTGCTACTCGCTCTGGACCAGtccttttgttatatttaacatACCAAactggc

Function

symbol description
bend5 Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Orthologous to human BEND5 (BEN domain containing 5).

NR:

description
PREDICTED: BEN domain-containing protein 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004777 True 6673 mRNA 0.38 6 1691028 1718262

Neighbor

gene id symbol gene type direction distance location
AMCG00004778 agbl4 coding downstream 84762 1561785 ~ 1606266 (-)
AMCG00004779 NA coding downstream 170542 1519517 ~ 1520486 (-)
AMCG00004773 NA coding downstream 462445 1228125 ~ 1228583 (-)
AMCG00004768 cacna1e,LOC107665051,LOC107549680,LOC107599003 coding downstream 513406 1177341 ~ 1177622 (-)
AMCG00004771 LOC107700326,LOC107562853,LOC107671548,LOC106613910,LOC108436878 coding downstream 540738 1142360 ~ 1150290 (-)
AMCG00004780 LOC100286605,LOC106613892,LOC103464064 coding upstream 178018 1896280 ~ 1912141 (-)
AMCG00004781 NA coding upstream 482949 2201211 ~ 2204495 (-)
AMCG00004785 dmrta2,LOC106613895,LOC106584330 coding upstream 970984 2689246 ~ 2691272 (-)
AMCG00004787 faf1,LOC102783815 coding upstream 975763 2694025 ~ 2993047 (-)
AMCG00004789 rnf11,LOC106584326,LOC105019411,LOC106599774 coding upstream 1318920 3037182 ~ 3047714 (-)
G142990 NA non-coding downstream 163218 1527578 ~ 1527810 (-)
G142972 NA non-coding downstream 304341 1386423 ~ 1386687 (-)
G142967 NA non-coding downstream 310149 1379880 ~ 1380879 (-)
G142959 NA non-coding downstream 401043 1289664 ~ 1289985 (-)
G142953 NA non-coding downstream 520512 1170013 ~ 1170516 (-)
G143046 NA non-coding upstream 176826 1895088 ~ 1924283 (-)
G143062 NA non-coding upstream 571317 2289579 ~ 2290140 (-)
G143095 elavl4,LOC107657884,LOC106613894 non-coding upstream 838592 2556854 ~ 2561991 (-)
G143105 NA non-coding upstream 922316 2640578 ~ 2640860 (-)
G143142 NA non-coding upstream 963058 2681320 ~ 2681561 (-)
AMCG00004763 LOC107393006 other downstream 1044417 644004 ~ 646611 (-)
G142773 NA other downstream 1560325 127778 ~ 130703 (-)
G142770 NA other downstream 1568501 119695 ~ 122527 (-)
G143145 NA other upstream 991292 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 1401967 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 2390820 4109082 ~ 4116414 (-)
G143659 NA other upstream 4018547 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 6635727 8353989 ~ 8377001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036306 bend5 coding NC_007119.7 CM002892.2 15502785 ~ 15520907 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_05308426_05318353 BEND5 coding CI01000010 null 5308292 ~ 5319096 (+)