AMCG00004788


Basic Information

Item Value
gene id AMCG00004788
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3123081 ~ 3160209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004788
ATGAAAGCTGCCTACCTCAGCATGCTGAGTAAGGAGGACTGCAAGCCCTTCGCGGAAAGTGAGATGGAGCTCTTCAGGAAGGTGTCAGGGTTGAAACAGAAGATTGCTGGGAAGTCCCTGCCCACAGAGAAATTTGCCATCCGTAAAGCTCGCCGGTACCTGGCTGAGAGCCCCATCGCTCTGCCTGCTCCTCCACTGTGTCCCCAAGTTTAA
>TU180081
TAAGGTTGTAACATATTTGTTCTCAACAGGCTACTTATGCTTACATGAAAGCTGCCTACCTCAGCATGCTGAGTAAGGAGGACTGCAAGCCCTTCGCGGAAAGTGAGATGGAGCTCTTCAGGAAGGTGTCAGGGTTGAAACAGAAGATTGCTGGGAAGTCCCTGCCCACAGAGAAATTTGCCATCCGTAAAGCTCGCCGGTACCTGGCTGAGAGCCCCATCGCTCTGCCTGCTCCTCCACTGGTCAGTCCCTGATCATACAGAATGATTTCATTAGTAACACAGAAAGGcta
>TU180082
ccagaagaccgcagtggtttggagggtctgaaggtaactcagTGCTGTCTGGTCCAGACAGTGGCTACTTATGCTTACATGAAAGCTGCCTACCTCAGCATGCTGAGTAAGGAGGACTGCAAGCCCTTCGCGGAAAGTGAGATGGAGCTCTTCAGGAAGGTGTCAGGGTTGAAACAGAAGATTGCTGGGAAGTCCCTGCCCACAGAGAAATTTGCCATCCGTAAAGCTCGCCGGTACCTGGCTGAGAGCCCCATCGCTCTGCCTGCTCCTCCACTGGTCAGTCCCTGATCATACAGAATGATTTCATTAGTAACACAGAAAGGcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004788 False 213 mRNA 0.54 3 3123267 3160209
TU180081 False 292 TUCP 0.49 2 3123223 3124482
TU180082 True 326 TUCP 0.52 3 3123081 3124482

Neighbor

gene id symbol gene type direction distance location
AMCG00004786 NA coding upstream 120156 2998006 ~ 3002925 (+)
AMCG00004784 NA coding upstream 170457 2952311 ~ 2952624 (+)
AMCG00004783 elavl4,LOC107657884,LOC106613894 coding upstream 564408 2548607 ~ 2558673 (+)
AMCG00004782 elavl4,LOC106613894 coding upstream 632391 2490454 ~ 2490690 (+)
AMCG00004775 NA coding upstream 1665831 1435263 ~ 1457250 (+)
AMCG00004791 calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980 coding downstream 91761 3251970 ~ 3262480 (+)
AMCG00004792 NA coding downstream 142294 3302503 ~ 3307925 (+)
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding downstream 372275 3532484 ~ 3556450 (+)
AMCG00004798 mfsd14a,LOC106613595 coding downstream 433191 3593400 ~ 3627243 (+)
AMCG00004796 NA coding downstream 472684 3632893 ~ 3642414 (+)
G143170 NA non-coding upstream 23697 3099122 ~ 3099384 (+)
G143166 NA non-coding upstream 36687 3084372 ~ 3086394 (+)
G143109 LOC103376870 non-coding upstream 361451 2720298 ~ 2761630 (+)
G143107 NA non-coding upstream 441533 2681304 ~ 2681548 (+)
G143074 NA non-coding upstream 560692 2559317 ~ 2562389 (+)
G143192 NA non-coding downstream 74444 3234653 ~ 3236347 (+)
G143195 NA non-coding downstream 150698 3310907 ~ 3376024 (+)
G143218 NA non-coding downstream 216860 3377069 ~ 3377271 (+)
G143237 NA non-coding downstream 420873 3581082 ~ 3588105 (+)
G143302 NA non-coding downstream 528949 3689158 ~ 3690193 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 564001 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3000116 116491 ~ 122965 (+)
AMCG00004793 NA other downstream 217606 3377815 ~ 3395158 (+)
G143366 NA other downstream 789217 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 948813 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 1211500 4371709 ~ 4372089 (+)
G143626 NA other downstream 2263494 5423703 ~ 5424121 (+)

Expression


Co-expression Network