AMCG00004790 (ttc39a,LOC107743871,LOC107548186,LOC107699571)


Basic Information

Item Value
gene id AMCG00004790
gene name ttc39a,LOC107743871,LOC107548186,LOC107699571
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3120229 ~ 3217229 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004790
CTAACAGATGAGAATGGAGCCAAAATCACAAGTCCTCCAGAGTCACAGAAGTCAGACTTGTCTGTTGCTCTGGAAGATTGCATGGCCACCTTGGACCTGTTCCTAAGCAATGAATTTGACAAGGCACTAACTCAGCTTCAGTCCAAAACCAAAGAAAGCATGTACCACGCCCTCACATACGCCACAATCTTAGAGATGCAAGCCATGATGACCTTTGAACCTCAGGACATATTAACAGCAGGAAATACCATGAAGGAGGCCCAGGCAGTTTGTCAAAGGAGCAAACAACCCAACAGCATCAATGAGGAGATCCACGCCGAGCTGTGCTATGCTGAGTGCCTCCTGCAAAGGGCAGCACTTACGTTTCTCCAGgATGAAAACATGATTAGTTTCATCAAAGGAGGTATCAAAGTGAGAAGCAGTTACCAGACATACAAGGACCTTCATACAATTCTACAGTCACCTTCCTACACCCAAGGAGAAAACCACTGTCACTTTGAGGGAGGTGTCAAACTTGGGGTGGGAGCCTTTAGTCTGACGCTCTCTATGCTACCCACAAGGATACTTCGGTTGTTGGAGGTGGTGGGGTTTTCTGGTAACAAGGAGTATGGACTACAACATCTCCAGGAGGGAGCAGACACTCACAGCTTCAGGGCATTCCTGTGTACCATGTTGCTGCTCTGCTACCACACCTTCATGAGCTTCATCCTTGGTGAGATGCCACTGTCCCCTTCTGAGCCACCCTTCTGTACACTGCCCCTTCTGACCCGGACAGGGGAAGGAGATGTGGAGGATGCTGAAAAACTTCTACAGCCATTCCTCAAACAGTATCCCAAGGCAATTGTAAAGTTTGAAGAGTGCTGTGAGGCTCAGCAGCACTGGAAGCAGTTCCATCACATGTGTTATTGGGAGCTGATGTGGTGTTTCACATACAAGAGGCAcataCTCCCATACATGACAGAGATGATGTACATCTGGAATGGGTACACTGTGATCGGAAAGCATCGAGACCTGACAGAAGGTATGCTGAAGACTCTGGATGAGGCACAGAGGAGGCTGGAACACAACCCAACATCTGACTACACAATAGATGACCAATGTCTAGTTAGTCTTCTGAAGGGCTTGTGTCTGAAGCACCTTGGTTACCATGAAGAGGCTGAACACTACTTCACCCTTGTCCTCTGCAAtgaaacacaaatcaaatatGATCACTATTTAGTGCCAAATGCTCTGCTAGAACATGGGCTTCTGTGTATGGAGCAAGGGAGGATGGAAGAGGCGATCAAACTTCTGGAAACAGCAAAGACGGCCATGGGATGGGATCGGGTTCTGGAGGTCTTGGAGGTGGCCACAAGTAAGGAACGGGAGCAGGTGGTCTGGGAGGCGACCTCAGGACAGAAACAGGTTCAGGAGATCTAG
>TU180095
AGAGGAGATCCACGCCGAGCTGTGCTATGCTGAGTGCCTCCTGCAAAGGGCAGCACTTACGTTTCTCCAGgATGAAAACATGATTAGTTTCATCAAAGGAGGTATCAAAGTGAGAAGCAGTTACCAGACATACAAGGACCTTCATACAATTCTACAGTCACCTTCCTACACCCAAGGAGAAAACCACTGTCACTTTGAGGGAGGTGTCAAACTTGGGGTGGGAGCCTTTAGTCTGACGCTCTCTATGCTACCCACAAGGATACTTCGGTTGTTGGAGGTGGTGGGGTTTTCTGGTAACAAGGAGTATGGACTACAACATCTCCAGGAGGGAGCAGACACTCACAGCTTCAGGGCATTCCTGTGTACCATGTTGCTGCTCTGCTACCACACCTTCATGAGCTTCATCCTTGGGACAGGGGAAGGAGATGTGGAGGATGCTGAAAAACTTCTACAGCCATTCCTCAAACAGTATCCCAAGGGAGCTATCTTCTTGTTTTTCGCTGGGCGAATTGAGGAGATAAGAGGAAATCTGGATGCTGCAATTGTAAAGTTTGAAGAGTGCTGTGAGGCTCAGCAGCACTGGAAGCAGTTCCATCACATGTGTTATTGGGAGCTGATGTGGTGTTTCACATACAAGAGGCAGTGGAAGATGGCCTACTTCTATGCAGACCTGCTGAGCAAAGAGAGCGCCTGGTCCAAGG
>TU180096
AGGTCACAGAAGTCAGACTTGTCTGTTGCTCTGGAAGATTGCATGGCCACCTTGGACCTGTTCCTAAGCAATGAATTTGACAAGGCACTAACTCAGCTTCAGTCCAAAACCAAAGAAAGCATGTACCACGCCCTCACATACGCCACAATCTTAGAGATGCAAGCCATGATGACCTTTGAACCTCAGGACATATTAACAGCAGGAAATACCATGAAGGAGGCCCAGGCAGTTTGTCAAAGAGGAGATCCACGCCGAGCTGTGCTATGCTGAGTGCCTCCTGCAAAGGGCAGCACTTACGTTTCTCCAGgATGAAAACATGATTAGTTTCATCAAAGGAGGTATCAAAGTGAGAAGCAGTTACCAGACATACAAGGACCTTCATACAATTCTACAGTCACCTTCCTACACCCAAGGAGAAAACCACTGTCACTTTGAGGGAGGTGTCAAACTTGGGGTGGGAGCCTTTAGTCTGACGCTCTCTATGCTACCCACAAGGATACTTCGGTTGTTGGAGGTGGTGGGGTTTTCTGGTAACAAGGAGTATGGACTACAACATCTCCAGGAGGGAGCAGACACTCACAGCTTCAGGGCATTCCTGTGTACCATGTTGCTGCTCTGCTACCACACCTTCATGAGCTTCATCCTTGGGACAGGGGAAGGAGATGTGGAGGATGCTGAAAAACTTCTACAGCCATTCCTCAAACAGTATCCCAAGGGAGCTATCTTCTTGTTTTTCGCTGGGCGAATTGAGGAGATAAGAGGAAATCTGGATGCTGCAATTGTAAAGTTTGAAGAGTGCTGTGAGGCTCAGCAGCACTGGAAGCAGTTCCATCACATGTGTTATTGGGAGCTGATGTGGTGTTTCACATACAAGAGGCAGTGGAAGATGGCCTACTTCTATGCAGACCTGCTGAGCAAAGAGAGCGCCTGGTCCAAGG

Function

symbol description
ttc39a Orthologous to human TTC39A (tetratricopeptide repeat domain 39A).

NR:

description
PREDICTED: tetratricopeptide repeat protein 39A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004790 True 1419 mRNA 0.48 16 3120229 3217229
TU180095 False 701 TUCP 0.49 8 3138857 3160673
TU180096 False 938 TUCP 0.48 10 3138857 3200167

Neighbor

gene id symbol gene type direction distance location
AMCG00004789 rnf11,LOC106584326,LOC105019411,LOC106599774 coding downstream 72515 3037182 ~ 3047714 (-)
AMCG00004787 faf1,LOC102783815 coding downstream 127182 2694025 ~ 2993047 (-)
AMCG00004785 dmrta2,LOC106613895,LOC106584330 coding downstream 428957 2689246 ~ 2691272 (-)
AMCG00004781 NA coding downstream 915734 2201211 ~ 2204495 (-)
AMCG00004780 LOC100286605,LOC106613892,LOC103464064 coding downstream 1208088 1896280 ~ 1912141 (-)
AMCG00004794 LOC106584322,LOC108266023,LOC102791747 coding upstream 188620 3405849 ~ 3416284 (-)
AMCG00004799 NA coding upstream 395682 3612911 ~ 3632903 (-)
AMCG00004800 NA coding upstream 424261 3641490 ~ 3648200 (-)
AMCG00004802 NA coding upstream 431531 3648760 ~ 3654005 (-)
AMCG00004801 NA coding upstream 443636 3660865 ~ 3674824 (-)
G143180 NA non-coding downstream 12400 3105295 ~ 3107829 (-)
G143177 NA non-coding downstream 21514 3098502 ~ 3098715 (-)
G143158 NA non-coding downstream 115556 3004422 ~ 3004673 (-)
G143149 NA non-coding downstream 206674 2874367 ~ 2913555 (-)
G143140 LOC103376870 non-coding downstream 383530 2731408 ~ 2736699 (-)
G143189 NA non-coding upstream 6998 3224227 ~ 3224490 (-)
G143206 calr,LOC102308154,LOC107393148,LOC100701980,LOC101484884,LOC102192544 non-coding upstream 38582 3255811 ~ 3257926 (-)
G143204 NA non-coding upstream 155804 3373033 ~ 3375723 (-)
G143256 NA non-coding upstream 363921 3581150 ~ 3582183 (-)
G143258 NA non-coding upstream 372766 3589995 ~ 3591305 (-)
G143145 NA other downstream 410225 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 2473618 644004 ~ 646611 (-)
G142773 NA other downstream 2989526 127778 ~ 130703 (-)
G142770 NA other downstream 2997702 119695 ~ 122527 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 891853 4109082 ~ 4116414 (-)
G143659 NA other upstream 2519580 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 5136760 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 5619131 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 5655656 8872885 ~ 8906594 (-)

Expression


Co-expression Network