AMCG00004798 (mfsd14a,LOC106613595)


Basic Information

Item Value
gene id AMCG00004798
gene name mfsd14a,LOC106613595
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3593400 ~ 3627243 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004798
ATGACCcaagggaagaagaaaaagcgGGCGAACCGCAGTATTATGCTGGCGAAGAAAATCATTATCAAGGATGGAGGAACGccaCAAGGAATAGGAGCCCCAAGTGTATACCATGCTGTGATTGTGATCTTCCTGGAATTCTTTGCCTGGGGTCTTCTGACAGCTCCCACTCTAGTGGTATTGCACGAGACATTCCCAAAGCATACGTTTTTGATGAATGGCTTGATTCAGGGAGTAAAGGGTTTGCTGTCATTCCTGAGTGCCCCCCTGATTGGTGCTCTATCAGATGTGTGGGGGAGAAAGTCTTTCTTGCTGCTAACAGTCTTCTTCACCTGCGCTCCCATTCCACTCATGAAAATCAGTCCCTGgtggTATTTTGCTGTTATTTCTGTGTCCGGGGTGTTTGCTGTAACCTTCTCTGTGGTTTTTGCTTACGTGGCTGATATAACCCAGGAACATGAAAGGAGTATGGCCTATGGATTGGTATCTGCAACGTTTGCGGCCAGCCTAGTCACCAGCCCAGCCATAGGTGCCTACCTGGGCCGGGTCTACGGAGACAGTCTAGTGGTGGTCCTGGCCACAGCCATTGCCCTACTGGACATATGCTTCATCCTAGTGGCAGTGCCCGAGTCTCTGCCTGAGAAGATGAGGCCAGCCTCATGGGGAGCTCCCATCTCCTGGGAACAGGCAGATCCATTTGCATCTCTTAAAAAAGTGGGTCAGGACTCGACAGTATTGCTGATTTGTATAACGGTGTTCCTCTCCTACCTCCCTGAAGCTGGCCAGTACTCGAGCTTCTTCCTGTATCTCCGACAGATAATGGGGTTTTCACCAGAAAGCGTTGCTGCGTTTATAGCTGTCCTGGGGTTGCTCTCCATCATTGCACAGaCTGTAGTCTTAAGTTTACTGATGCGTTCAATTGGGAACAAGAACACTATTTTACTGGGCTTGGGGTTCCAGATTCTGCAGCTGGCCTGGTACGGTTTTGGATCCGAACCCTGGATGATGTGGGCCGCTGGTGCTGTTGCAGCCATGTCTAGTATTACTTTCCCAGCAGTCAGTGCGCTGGTGTCTAGGACAGCTGACCCAGACCAGCAAGGAGTGGTGCAGGGCATGATCACAGGGATCCGAGGGCTATGCAACGGCCTGGGGCCTGCGCTCTACGGGTTCATTTTCTATATATTCCACGTGGAGCTGAACGAACTCCCAGATGGGGAAGGCAGCCCTGGAGCGCAGCATCATTCTCAACATGAGGAGCAGAGCTCAATCATTCCCGGGCCGCCCTTCCTGTTTGGAGCATGTGCTGTCCTGCTGGCCCTGCTGGTTGCTTTGTTCATACCTGAACACACGAACGCCTCCTTAAGAAACAGCAACTGGAAGAAGCACTTATCAAACCACGGGCACCCTCACAGTCCCCAGACCCCAGGCGAGGCCAAGGAACCCCTTTTACAAGACACCAATcctgtgtgtgctgtgctgcaggatTCCCACATTTCAGTTCCACTGAGACAGCACCTCCTGCTTCACCCTGTGAGACTCCTgcagtcaacacacacacacaaggcccttgtaaataaatacatcacacaGgtaTTCGGGTAG

Function

symbol description
mfsd14a Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within acrosome assembly; sperm mitochondrion organization; and spermatid nucleus differentiation. Predicted to be integral component of membrane.

NR:

description
hippocampus abundant transcript 1 protein

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004798 True 1602 mRNA 0.52 15 3593400 3627243

Neighbor

gene id symbol gene type direction distance location
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding upstream 36950 3532484 ~ 3556450 (+)
AMCG00004792 NA coding upstream 285475 3302503 ~ 3307925 (+)
AMCG00004791 calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980 coding upstream 330920 3251970 ~ 3262480 (+)
AMCG00004786 NA coding upstream 590475 2998006 ~ 3002925 (+)
AMCG00004784 NA coding upstream 640776 2952311 ~ 2952624 (+)
AMCG00004796 NA coding downstream 5650 3632893 ~ 3642414 (+)
AMCG00004797 NA coding downstream 51265 3678508 ~ 3688735 (+)
AMCG00004805 cdc14a,LOC106613592 coding downstream 75242 3702485 ~ 3720008 (+)
AMCG00004804 cdc14a,cdc14ab,LOC107588060,LOC107653633,LOC107669826 coding downstream 117789 3745032 ~ 3764307 (+)
AMCG00004803 NA coding downstream 150120 3777363 ~ 3778397 (+)
G143237 NA non-coding upstream 5295 3581082 ~ 3588105 (+)
G143218 NA non-coding upstream 216129 3377069 ~ 3377271 (+)
G143195 NA non-coding upstream 217376 3310907 ~ 3376024 (+)
G143192 NA non-coding upstream 357053 3234653 ~ 3236347 (+)
G143170 NA non-coding upstream 494016 3099122 ~ 3099384 (+)
G143302 NA non-coding downstream 61915 3689158 ~ 3690193 (+)
G143356 NA non-coding downstream 279350 3906593 ~ 3906921 (+)
G143380 NA non-coding downstream 456856 4084099 ~ 4089273 (+)
G143403 NA non-coding downstream 475019 4102262 ~ 4103856 (+)
G143405 NA non-coding downstream 486018 4113261 ~ 4113488 (+)
AMCG00004793 NA other upstream 198242 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 433191 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 1034320 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3470435 116491 ~ 122965 (+)
G143366 NA other downstream 322183 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 481779 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 744466 4371709 ~ 4372089 (+)
G143626 NA other downstream 1796460 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3981658 7608901 ~ 7624070 (+)

Expression


Co-expression Network