AMCG00004805 (cdc14a,LOC106613592)


Basic Information

Item Value
gene id AMCG00004805
gene name cdc14a,LOC106613592
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3702485 ~ 3720008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004805
atggcAGACGATCATGAACTTCTTGGGGCTTCAGAGTTCATTAAAGATCGATTGTACTTCGCAACCctaagaaacaaaccaaaaagcacCGTAAACACGCATTACTTCTGCACGGATGACGAGTTTGTCTATGAAAACTTTTACGCAGACTTTGGACCTCTCAACTTGGCGATGCTGTATCGATACTGCTGTAAACTCAACAAGAAACTTAAATCTTTTACCTTGTCGAGGAAGAGGATTGTCCATTACACCAGCTTTGACCAACGCAAAAGGGCAAATGCTGCCGTATTAATTGGTGCCTATGCTGTCATCTACTTAAAGAAAACTCCAGAAGAAGCTTACAGAGCCCTGGTGTCTGGGTCCAATGCTTCATATCTACCTTTC

Function

symbol description
cdc14a Predicted to enable protein serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Involved in sensory perception of sound. Located in centrosome; cytosol; and nuclear body. Implicated in autosomal recessive nonsyndromic deafness 32.

NR:

description
PREDICTED: dual specificity protein phosphatase CDC14A isoform X3

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004805 True 384 mRNA 0.43 5 3702485 3720008

Neighbor

gene id symbol gene type direction distance location
AMCG00004797 NA coding upstream 13750 3678508 ~ 3688735 (+)
AMCG00004796 NA coding upstream 60071 3632893 ~ 3642414 (+)
AMCG00004798 mfsd14a,LOC106613595 coding upstream 75242 3593400 ~ 3627243 (+)
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding upstream 146035 3532484 ~ 3556450 (+)
AMCG00004792 NA coding upstream 394560 3302503 ~ 3307925 (+)
AMCG00004804 cdc14a,cdc14ab,LOC107588060,LOC107653633,LOC107669826 coding downstream 25024 3745032 ~ 3764307 (+)
AMCG00004803 NA coding downstream 57355 3777363 ~ 3778397 (+)
AMCG00004806 NA coding downstream 62790 3782798 ~ 3791933 (+)
AMCG00004807 NA coding downstream 109033 3829041 ~ 3841272 (+)
AMCG00004809 slc30a7,LOC107653547,LOC107592711 coding downstream 144550 3864558 ~ 3879836 (+)
G143302 NA non-coding upstream 12292 3689158 ~ 3690193 (+)
G143237 NA non-coding upstream 114380 3581082 ~ 3588105 (+)
G143218 NA non-coding upstream 325214 3377069 ~ 3377271 (+)
G143195 NA non-coding upstream 326461 3310907 ~ 3376024 (+)
G143192 NA non-coding upstream 466138 3234653 ~ 3236347 (+)
G143356 NA non-coding downstream 186585 3906593 ~ 3906921 (+)
G143380 NA non-coding downstream 364091 4084099 ~ 4089273 (+)
G143403 NA non-coding downstream 382254 4102262 ~ 4103856 (+)
G143405 NA non-coding downstream 393253 4113261 ~ 4113488 (+)
G143414 NA non-coding downstream 413267 4133275 ~ 4133909 (+)
AMCG00004793 NA other upstream 307327 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 542276 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 1143405 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3579520 116491 ~ 122965 (+)
G143366 NA other downstream 229418 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 389014 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 651701 4371709 ~ 4372089 (+)
G143626 NA other downstream 1703695 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3888893 7608901 ~ 7624070 (+)

Expression


Co-expression Network