AMCG00004808


Basic Information

Item Value
gene id AMCG00004808
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3856496 ~ 3864079 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004808
TTACTTTGGAGTACATCTGCTCGCATCAGCAGACAGCAGACGTATGCGAGGCAGCTGGTGCAATATGTACGTATGCATATATTAGCATACTCAAAACCTGTATTTCCAATGCCCCACTCCGCGTCACGGCAGCCGTTGCCCGCTTCAGGGTGAAGGATCCCAAAGTTGCCAAATGACgcaggtctgcgctgctccgccatTGGGATCGCTACACCTCGGCAGAgatgcgcagaactgcggacatctgcgctacaacgCGACACGAAAGTTGCGCACGGTTTTACGTGTTGACGGCAGATCCCATTCAATGAGAAAGCGTCCGACTGCATCCAGCCCATGCTTTGAAATGAGGATCTGTTATCGTGCCTGCAAGATGCACAGATCCAAACGCATTTACCTGCTGGTGCCCATCCTCCTGCTGGTGGGGGCGACTCTGACGGCCCTGCTCCCTGCCTCGGAGGAACGAGGGGCGGAGGTCCTCCGGAGAGGCAGCCTGCTCCGGTCACGGCAAGGCTCTCCCCGGGACTCCTTTACCATCGTCATGCAGACCTACAACCGCACCGACATCCTGCTCAAGCTGCTCAATCACTACCAGGCCATGCCCCAGCTGCACAAGATCATAATCGTCTGGAACAGCCTGGGTGAAAAGGTGCCCCGGGAGCTGTGGGAAGCTTTGGGCCCACACCCTGTGCCCGTGGTTTTCAAAGAGCAGGAGGTCAACCTCATGAGGAACAGGCTGCAGCTTTTTCCAGAGCAGGAAACTGAAGCTGTTTTAATGCTGGATGATGACACCCTGATCAGCACTCCTGATATTGACTTTGCCTTTTCTGTCTGGAAGCAATTCCCTGATCAGATCGTGGGCTTCGTCCCACGGAAGCACGTCACAACACCCTCAGGGGTGTACAGCTATGGCAGCTTTGAGCTCCAGGACCCCGCGGCAGGGCAGGGAGACCACTACTCCATGGTGCTGGTGGGGGCTGCATTCTTCCACAAGAAATACCTGCAAGCTTTCCAGAACCAACCGCCAGAGGTGCACAGACTGATCGACGACACGCAGAACTGTGACGACATCGCCGTCAACTTCCTGGTGGCCCAGCACACCCAGAAGCCTGCGGGGGTCTTCGTGAAGCCAGTGGACTTCCGTAACCTGGAGAAGGACGCCGCCAGTGGGTACCAGGGCATGTGGCACCGGGCCCATCACCTCCTGCAACGCTCTTACTGCCTCAACCGGCTGGCGCAGATCTATGGTCAGATGCCCCTGCGTTACACCAACATCATGATCTCACAGTTTGGCTTCCCCAGCTACGGCAACCACCGAGcctagaacaaagaccaaggagGTGCAAGGTTTAGACACTGGAGTGGGGGCTTTTCTTATTCCAAGtggtatgtttttctttaaattgattGTGGGGGGCTTGGTTAGGATTCAGCTGGCACACTTCTTTTCAGATACCCCAGTTGAATCCTTTGCATACCGCTCAATTGAAAGCAAGCTGTAAAAATCTGGTAGTATTTAAAgctatttgttattttttcagggGAGTAAAATGACGGGAAATGGTTCTTCCTGGTAGCAAATTGATTTGGTCCTTATGGGTTATTTTGCTATATACAAGGAGTATGCCTAAACCTCTCCACTCATTCAGTTTGTGGTTCTTTGGTCAGCTACTCCACTAAAAtacttataattattttcactaTTCCAAAATAACTTTAGTTCTGTTTATTACAGTGTTTAATGGATCCAGAACACATAGGATGAACAGAAAGTGATACCTCATAGTCTTCTCATTTGTGTAAGACAAATTGTTCTAGGGTTGCAATTTAAACAGAAGAGAACTACAAATATGAGGCCTGATTCTGTGACAGTATGGAATAATGTGAGTTTCTTTTGCACTATTTccttaaggggaaaaaaactaaaagagcTTCTGAATAAAGTGTAAAGCCACACACAACGTATGCCTCTTTCCCTTCAGTATACCtactgaagaagaagaaaaatcatGCATCTTTCTTCTCCAAAATACATCAAACTCTGAACTTAAGAGTGATATATGTAGTGCAAAAAggattttttgtatatacacGGGTTCTGGAGCCaaagtgtagttttttttttgttcaatgcacttgtttttgttttattgtaacaaATCAGGGGTGTGCTTTAGGTTTATTTCAGAGTTTATCCTTTTGTGTCACTAGAGGGCAGCAGGACCACACTCTCCTTGCTGTCAGACAGTGCACTCGAGCAAGTGTGATGTATAAAGTTAATCCACTAAGCATGGATTTATACAGCCGATTTGCAAACCCAGTACTTCCTGCCCATGCTTTTGTTATACCATTTAGTCATTTAGTAAACCATTTAGTTCACTTTTTATGTTAATTTCATAACATGGTGTGTATTCaacaaacatttactgtttatGTTGCTTCCAAATCAACAGGTTATTTATTACTTTCTGGGAATAACTGTAGAAATGCTCAAAGTGCCTGAAGCAGACACATTGATGTGCCTAGGCCAGATATGTTCAGATATCACCCAGTAAGTGGACATACTTTTTAATAGTGAAGGTTACTCAACCACAaccttctgtttcttttttttaaattatatcttACTTGAGCTTAATTTACTGAAATAATTGAGCAACTTGCACATTCTTTTCCCTAGGCCTTTAATAGCTGATGATTTGAGAGATGTACTGTACCCAATATAGCAGACCGAAGCCCTGAGAAGCGTAATATCAATCTAGTTAATCGGTGCAATGGCTTagaatatttgtatacattttatttttaagatttttaataCTTTACAGTGTTACAGGATTTGCAAGTCAGAGTGCAAagttatttacttacttatggTAAATTCAATTCCTTTTTCTCCCTGGAAATTTTTCTAAGATTGCCCTTGAGAAATCACCTTTGCTGAGTAAAGACCCTATTTACACTTTTGTAGGCTGCTGTTACCAGAAAATCAATATAACAACACACTTCCATGTTGCACATGACCCAAAAGAAACAGTCTTTTACCCGAGGCTTTGTCACTGCACGtctatgttgtgttttgttactttgttttttcttattgttgCAGGGAATATGGGTATGTTTTATTGGggaaaaacttttatttttatttttatctcctgTGCTtctaaaaacaatgaatgaataaagAGATTAATTACCTATACAAAAAGCATGTACTGTATTAATACCAAACCACAGTCAAGTTGTCATTGAAAGGAGGAAGAGTGGTAACTTACACCATATACTTAACAAGATCTATGATCTAATGAAAGTGTAACCAGAAATATATACAGAGGAATGGACAGTTCTTACAATGGACAACCGTTTTCCAGTACAATTAACCTGCAGCTCCTCTGTTCCCCAACAAAAGTGCAGAGAGATGGCAGGGTTTCCTGTAGAAATGTTCGTAGGCAAGGTGGGGGGCATATGTTTGGCCAGGCGGGCCACCTGGCCTGAATAGCACTGCGAGAAACTGGATGGAATCACAGGAAGCTGCAGAGTTCAAAACTTCCCCTTTTTGTGTATGTCAGTGCAGTCTCATACTTTTATTGCTGGCATTTTGATTGCTGGTTCCCcttatgaaggaaaaaaaaaattactataCTTTCCCACCACTTGGTTATGCTAATAGGCCAAAGATGGGTTACCGGGACAAgttgtattttgcattgaatataTTCTCtcttatttctgatgccttCTGATGCAAATGGTTAAATCCTCATGAGTCTGTTGTTTCAACATAAAtaactgcattgtttttaaatataattctgaaatgatTGGTTACTTCTTTTCTTAGTCTTATTCTGGGttatgcaaaatattaaaaatacatacaaaacattatgTAACCCTCAGACTATAcgtatacataaacacacaaagaataAACACATTGATATCCAAAGATAACTCGGATTCCAGATCTGtggcttgtttttttgtctcaAACAGCCCaaatcatt

Function

GO:

id name namespace
GO:1901135 carbohydrate derivative metabolic process biological_process

KEGG:

id description
K02369 EXTL2; alpha-1,4-N-acetylglucosaminyltransferase EXTL2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004808 True 4013 mRNA 0.43 4 3856496 3864079

Neighbor

gene id symbol gene type direction distance location
AMCG00004801 NA coding downstream 181672 3660865 ~ 3674824 (-)
AMCG00004802 NA coding downstream 202491 3648760 ~ 3654005 (-)
AMCG00004800 NA coding downstream 208296 3641490 ~ 3648200 (-)
AMCG00004799 NA coding downstream 223593 3612911 ~ 3632903 (-)
AMCG00004794 LOC106584322,LOC108266023,LOC102791747 coding downstream 440212 3405849 ~ 3416284 (-)
AMCG00004811 NA coding upstream 44068 3908147 ~ 3914961 (-)
AMCG00004812 dph5,LOC106613590 coding upstream 68047 3932126 ~ 3935005 (-)
AMCG00004820 NA coding upstream 269630 4133709 ~ 4150001 (-)
AMCG00004823 NA coding upstream 336929 4201008 ~ 4217993 (-)
AMCG00004824 NA coding upstream 460884 4324963 ~ 4359936 (-)
G143318 NA non-coding downstream 84614 3771570 ~ 3771882 (-)
G143311 NA non-coding downstream 86153 3747928 ~ 3770343 (-)
G143258 NA non-coding downstream 265191 3589995 ~ 3591305 (-)
G143256 NA non-coding downstream 274313 3581150 ~ 3582183 (-)
G143204 NA non-coding downstream 480773 3373033 ~ 3375723 (-)
G143355 slc30a7,LOC107653547,LOC107592711,LOC107588064 non-coding upstream 34137 3898216 ~ 3902159 (-)
G143370 NA non-coding upstream 85336 3949415 ~ 3949837 (-)
G143372 NA non-coding upstream 108237 3972316 ~ 3972545 (-)
G143396 NA non-coding upstream 221367 4085446 ~ 4088993 (-)
G143400 serpinc1,LOC102797582 non-coding upstream 230571 4094650 ~ 4098416 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 639267 3120229 ~ 3217229 (-)
G143145 NA other downstream 1146492 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3209885 644004 ~ 646611 (-)
G142773 NA other downstream 3725793 127778 ~ 130703 (-)
G142770 NA other downstream 3733969 119695 ~ 122527 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 245003 4109082 ~ 4116414 (-)
G143659 NA other upstream 1872730 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4489910 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4972281 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 5008806 8872885 ~ 8906594 (-)

Expression


Co-expression Network