AMCG00004811


Basic Information

Item Value
gene id AMCG00004811
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3908147 ~ 3914961 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004811
CTGTACAATTTCGGGGAGACTGTGTCTGTAGTGTTCTGGACAGACACTTGGAAACCAGAGAGCTTCTATGACAAAATTCAGAAGAACCGAGCCAATGGAATGCACACATTGTGCTTACTTGataTTAAAGTCAAGGAGCAGTCACTTGAGAATTTGATGAAGGGCCGCAAGATTTACGAGCCCCCCAGGTACATGAGCGTGAAGCAGGCCGCACAGCAGCTCCTGGAAATCGTCCTGAACCGGCGGGAGCAGAGCAAGGAGCTGGCGATCTCTGAAGACACCATCTGTGTGGGCTTGTCCAGGGTCGGGGCGGAGGATCAGTCGATCCGCGCTGGCACCCTGCAGCAGATGGCTTCGGCAGAGCTGGGGGCCCCCCTGCACTCGCTCATCATCACCGGGCACATGCACCCCCTAGAGATCGACATGCTCCGACTGTTCGCCATTGAACCGGAAACGTTCGACAACCTGAAAATGACGGACAGCTCCACTTACACATCTTAG

Function

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
K00586 DPH5; diphthine methyl ester synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004811 True 501 mRNA 0.54 4 3908147 3914961

Neighbor

gene id symbol gene type direction distance location
AMCG00004808 NA coding downstream 44068 3856496 ~ 3864079 (-)
AMCG00004801 NA coding downstream 233323 3660865 ~ 3674824 (-)
AMCG00004802 NA coding downstream 254142 3648760 ~ 3654005 (-)
AMCG00004800 NA coding downstream 259947 3641490 ~ 3648200 (-)
AMCG00004799 NA coding downstream 275244 3612911 ~ 3632903 (-)
AMCG00004812 dph5,LOC106613590 coding upstream 17165 3932126 ~ 3935005 (-)
AMCG00004820 NA coding upstream 218748 4133709 ~ 4150001 (-)
AMCG00004823 NA coding upstream 286047 4201008 ~ 4217993 (-)
AMCG00004824 NA coding upstream 410002 4324963 ~ 4359936 (-)
AMCG00004829 patj,inadl coding upstream 524579 4439540 ~ 4482780 (-)
G143355 slc30a7,LOC107653547,LOC107592711,LOC107588064 non-coding downstream 5988 3898216 ~ 3902159 (-)
G143318 NA non-coding downstream 136265 3771570 ~ 3771882 (-)
G143311 NA non-coding downstream 137804 3747928 ~ 3770343 (-)
G143258 NA non-coding downstream 316842 3589995 ~ 3591305 (-)
G143256 NA non-coding downstream 325964 3581150 ~ 3582183 (-)
G143370 NA non-coding upstream 34454 3949415 ~ 3949837 (-)
G143372 NA non-coding upstream 57355 3972316 ~ 3972545 (-)
G143396 NA non-coding upstream 170485 4085446 ~ 4088993 (-)
G143400 serpinc1,LOC102797582 non-coding upstream 179689 4094650 ~ 4098416 (-)
G143406 NA non-coding upstream 192558 4107519 ~ 4108856 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 690918 3120229 ~ 3217229 (-)
G143145 NA other downstream 1198143 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3261536 644004 ~ 646611 (-)
G142773 NA other downstream 3777444 127778 ~ 130703 (-)
G142770 NA other downstream 3785620 119695 ~ 122527 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 194121 4109082 ~ 4116414 (-)
G143659 NA other upstream 1821848 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4439028 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4921399 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4957924 8872885 ~ 8906594 (-)

Expression


Co-expression Network