Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004812 |
| gene name | dph5,LOC106613590 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 3932126 ~ 3935005 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| dph5 | Predicted to enable diphthine synthase activity. Predicted to act upstream of or within methylation and peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Orthologous to human DPH5 (diphthamide biosynthesis 5). |
| description |
|---|
| PREDICTED: diphthine methyl ester synthase |
| id | name | namespace |
|---|---|---|
| GO:0017183 | peptidyl-diphthamide biosynthetic process from peptidyl-histidine | biological_process |
| GO:0004164 | diphthine synthase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004812 | True | 273 | mRNA | 0.48 | 3 | 3932126 | 3935005 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004811 | NA | coding | downstream | 17165 | 3908147 ~ 3914961 (-) |
| AMCG00004808 | NA | coding | downstream | 68047 | 3856496 ~ 3864079 (-) |
| AMCG00004801 | NA | coding | downstream | 257302 | 3660865 ~ 3674824 (-) |
| AMCG00004802 | NA | coding | downstream | 278121 | 3648760 ~ 3654005 (-) |
| AMCG00004800 | NA | coding | downstream | 283926 | 3641490 ~ 3648200 (-) |
| AMCG00004820 | NA | coding | upstream | 198704 | 4133709 ~ 4150001 (-) |
| AMCG00004823 | NA | coding | upstream | 266003 | 4201008 ~ 4217993 (-) |
| AMCG00004824 | NA | coding | upstream | 389958 | 4324963 ~ 4359936 (-) |
| AMCG00004829 | patj,inadl | coding | upstream | 504535 | 4439540 ~ 4482780 (-) |
| AMCG00004828 | NA | coding | upstream | 641411 | 4576416 ~ 4591430 (-) |
| G143355 | slc30a7,LOC107653547,LOC107592711,LOC107588064 | non-coding | downstream | 29967 | 3898216 ~ 3902159 (-) |
| G143318 | NA | non-coding | downstream | 160244 | 3771570 ~ 3771882 (-) |
| G143311 | NA | non-coding | downstream | 161783 | 3747928 ~ 3770343 (-) |
| G143258 | NA | non-coding | downstream | 340821 | 3589995 ~ 3591305 (-) |
| G143256 | NA | non-coding | downstream | 349943 | 3581150 ~ 3582183 (-) |
| G143370 | NA | non-coding | upstream | 14410 | 3949415 ~ 3949837 (-) |
| G143372 | NA | non-coding | upstream | 37311 | 3972316 ~ 3972545 (-) |
| G143396 | NA | non-coding | upstream | 150441 | 4085446 ~ 4088993 (-) |
| G143400 | serpinc1,LOC102797582 | non-coding | upstream | 159645 | 4094650 ~ 4098416 (-) |
| G143406 | NA | non-coding | upstream | 172514 | 4107519 ~ 4108856 (-) |
| AMCG00004790 | ttc39a,LOC107743871,LOC107548186,LOC107699571 | other | downstream | 714897 | 3120229 ~ 3217229 (-) |
| G143145 | NA | other | downstream | 1222122 | 2709554 ~ 2710004 (-) |
| AMCG00004763 | LOC107393006 | other | downstream | 3285515 | 644004 ~ 646611 (-) |
| G142773 | NA | other | downstream | 3801423 | 127778 ~ 130703 (-) |
| G142770 | NA | other | downstream | 3809599 | 119695 ~ 122527 (-) |
| AMCG00004819 | zbtb37,LOC106613586 | other | upstream | 174077 | 4109082 ~ 4116414 (-) |
| G143659 | NA | other | upstream | 1801804 | 5736809 ~ 5783184 (-) |
| G144050 | selenof,LOC106598901 | other | upstream | 4418984 | 8353989 ~ 8377001 (-) |
| AMCG00004894 | kat3,kyat3,ccbl2,LOC100332215 | other | upstream | 4901355 | 8836360 ~ 8847775 (-) |
| G144115 | LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 | other | upstream | 4937880 | 8872885 ~ 8906594 (-) |
