AMCG00004817


Basic Information

Item Value
gene id AMCG00004817
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4090612 ~ 4100452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004817
CGATCCTCATCACAACCCTCTGCCCTGCCCCAGCGGCCACTGAACTCCCTCTCCTTGTTTGTCAAGTGGGGggactgatttgttttgttgccCCCTGTTCCTCCAGGGGTCTTGCTGCTACCCCACTCGCACTCCTCACTACGGGGAGAAGACAGAAAACGCAGAATGAGGGTCTTAGCTTTCTTGGCACTGTGCCTTGGTGGCGCTCTTGCAGTGAGTGACATCTGCACGGCAAAGCCCAAAGACTTGCCGCTGGAGCCCATGTGTATCTACCGCAACCCCAACACCACAACGGAGacggaggaggcggaggaggtgGACGCCAAGCCGGAAAAGATCCCCGAGTCCACCAACCCCCGCGTGTGGGAGCTGTCCAAGGCCAATAGTCGCTTCGCCCTGAAGCTGTTCAAGCATTTAGCTGGTTCCAAGACCGCAGCGGACAACATCTTCATGTCACCCATCAGCATCTCCACCGCCTTCGCCATGACCAAACTGGGCGCCTGCAACCATACTCTACAGGAGATCATGCAGGTGTTCCAGTTTAACACGATCAAGGAGAAGACGTCCGACCAGGTGCACTTCTTCTTTGCCAAGCTCAATTGCAGGCTGTACCGAAAGGCAGACAAGTCCTCCGTGCTCAGTTCTGCCAACCGGCTCTTTGGGGAGAAGTCCCTGACCTACAGTGAGACCTTCCAGAACATCAGTGAAATGGTCTATGGGGCCAAGCTCTTGCCTCTCAACTTTAAGGAAAAGCCAGAATTGTCCCGGGTTGTCATCAATGACTGGGTAGCCAACAAAACCGAGCAAAGGATTAAAGATGTCCTCCCCGAGGGAGTTATTGGTGTAGATACAGTTCTAGTCCTTGTAAACACCATCTACTTCAAGGGACAATGGAAGGAGAAGTTTGACAAGGAGAGTGTTTATAAAGCAGACTTCCATCTGACCAGTACAGAGATCTGTCAGGTGTCCATGATGTACCAGGAGAAGAAGTTTCGCTATGCAAAGTTCCCAGAGGACAAGGTCAAAGTGCTGGAGCTGCCCTACAAAGGCAATGACATCACCATGGTGCTGATCCTGCCCATGAAGGACACTCCCCTGGCAGAGGTGGAGGCGACCCTGGACCTCAAGAAGCTGCTGGGGTGGCTGGACACCTTGACGGAGACCACAGTGGCCGTGCAAGTCCCCCGCTTCCGTATCGAGGACAACTTCAGCCTGAAGGAAAAGCTGGAAGACATGGGCATTCACGACCTCTTCAGCCCCTCAAGGGCCAATCTGCCAGGCATTCTTGCAGATGGAGGCAACAACGTGTACATCTCGGATGCCTTCCACAAAGCCTTCTTGGAgGTGAATGAGGAGGGCAGTGAGGCAGCTGCTGCCACTGCCGTCATTGCCATGGGGCGCTCCATCAACCTCTTCCGTGAGGTGTTCAACGCCAACAAACCCTTCCTGCTGATGATCAGGGAGGCCTCCATCAACACCATCATCTTCATGGGCCGAGTGGCCAATCCCTGTGATGACCAACAGTGACCCTCACgctaacccccccaccccccacacccatGATGAGAACCCCAGACAGCGTCACCTTCCCCATCTCTGCCCAGGTAGCCACTTCTGCCAAGGAGTGGAGGGGGGGAATATTACCTGAGACAGCCCATATTTTATGATCTTCTTTCAATAAAAGGAGCGTTTAAAGGTTTCTTTCCCAGCTGTGGTATTCTCTTGTATCCCTTTGTATAGAGgattttttgtctttgttttttgtctttgtttttgtgcgTTTCCTCTCTCATAaaagcataagaacataagaaagtttacagacgagaggaggccattcgccccatcgtacTCATTtggtgattcaaggatcctatccagtctatttttaaatgttcccaaattgtcacttcaagaacatcgctggggagtttgttcagattgtgacgactctctgtgtgaagaagtgtc

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:2000266 regulation of blood coagulation, intrinsic pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03911 SERPINC1, AT3; antithrombin III

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004817 True 1971 mRNA 0.52 7 4090612 4100452

Neighbor

gene id symbol gene type direction distance location
AMCG00004818 NA coding upstream 11023 4053649 ~ 4079589 (+)
AMCG00004814 s1pr1,LOC106613588,LOC106573949 coding upstream 66227 4021807 ~ 4024385 (+)
AMCG00004815 NA coding upstream 69074 4004368 ~ 4021538 (+)
AMCG00004813 NA coding upstream 93366 3960595 ~ 3997246 (+)
AMCG00004810 slc30a7,LOC107653547,LOC107592711 coding upstream 192003 3897939 ~ 3898609 (+)
AMCG00004816 NA coding downstream 27774 4128226 ~ 4132115 (+)
AMCG00004822 NA coding downstream 63301 4163753 ~ 4191197 (+)
AMCG00004821 NA coding downstream 124455 4224907 ~ 4225812 (+)
AMCG00004826 NA coding downstream 189357 4289809 ~ 4301784 (+)
AMCG00004825 NA coding downstream 210316 4310768 ~ 4318334 (+)
G143380 NA non-coding upstream 1339 4084099 ~ 4089273 (+)
G143356 NA non-coding upstream 183691 3906593 ~ 3906921 (+)
G143302 NA non-coding upstream 400419 3689158 ~ 3690193 (+)
G143237 NA non-coding upstream 502507 3581082 ~ 3588105 (+)
G143218 NA non-coding upstream 713341 3377069 ~ 3377271 (+)
G143403 NA non-coding downstream 1810 4102262 ~ 4103856 (+)
G143405 NA non-coding downstream 12809 4113261 ~ 4113488 (+)
G143414 NA non-coding downstream 32823 4133275 ~ 4133909 (+)
G143440 NA non-coding downstream 117585 4218037 ~ 4238860 (+)
G143447 NA non-coding downstream 151257 4251709 ~ 4252089 (+)
G143366 NA other upstream 140775 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 695454 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 930403 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 1531532 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3967647 116491 ~ 122965 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 8570 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 271257 4371709 ~ 4372089 (+)
G143626 NA other downstream 1323251 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3508449 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 3572364 7672816 ~ 7692361 (+)

Expression


Co-expression Network