AMCG00004820


Basic Information

Item Value
gene id AMCG00004820
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4133709 ~ 4150001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004820
ATGCAGGTCTGTTCACACACTCAGAGCCTGGGAGTTGTGGCCCCTGTTCCAGGAATGAACCCTAGACTGCTGGTCTTGGAGAAAGCACTTCGTTTGGCTCACCGCCACGCtagacaaaacaacaaacccCTCTTTTCCTGTTTCTTCCTGGGTTCAGTCATAGTGGATGATGATGAGGAAGGTGTTACAATTACAGTGGACCGGTTTGATCCAGGGCGAGAAGGGCAGGGCTCCCCCGGGAAGGTACCCACTGCCCTCTTGCCTGGTGACTTCTTGGTACCCTGTACAGTGAGCACCCAGGGCCCAGCTTTAGCAGACACCATTGTGCACTCTGCAGAAGACTTCCACATTGCATTCAAGATGCTTCAACATTGCTGCTGTAGTAGAGAACCTCTGGAGTCCTCCAAACTTCTTACAATGAAAGTGCATCTGAACTGCACAGAGCACATGGACAATGTGCGCCTCAACCTTCACTGGGCCGCTGTTACACTCGCAAACACTCTGGACGCAACCCCCATCAGACCAGTGCCCGTCATTCCCACTGCTCTGGCCAGGAACTTATCCAGCCCAATGAGCCTGGCACAGGTTCAAAACACCTGCAAATATGGGTTTCTGACTATGGACCAGACGCGCAAACTGCTCCTGATACTGGAGTCTGATCCTAAAGCATACACTTTACCACTTGTAGGGATATGGCTGAGTGGGATCACACACATTCATAGCCCCCAGGTGTGGACGTGTTGTCTGAGGTACCTGTTCAGCTCTTCACTGCATGACAGGGTGATGTCCGAGAGGGGCGCTTTCCTCGTGGTCCTGTACTCCCTGACGCACAGGGAGCCCGAGTTCTACCAGTGTCAGCTCTACAGTGGACAGAAGGAGCTGGGCTTCCAGCTACTCACAAGCACCGAGTCCATCAATCTTTATAAGAACGTGGAGCCATCTGAGAGCCGTCCGTTACAGTTCGAGCTCAGTGCAGAAAGCCAGAACCAGGAGAGGGAGTTCTTCCAGGAGGTTGCATCACGCGTGTCCTTCTCTAGCGCTGGTGTGAATTCTCCGCAGAACAAGCTCTCTGTCACTGACCAAGACTCAGGTGTGGAGGATGAAGATCTTTCTCCAAGACCATCCCCCAGCCCACATCCCCTCAGCCAGCAGCTACGACGGATTCACCCTTCAGTTCCGGAACTCTCCCTAGTGTTTGATGGTAATTTTGTCGAAGCAAGAAAAGTGGGGCTAGAGGCTCCTGCAAACAATCCACCCCCCACTACAGCCCCCCATTTTGCAAAAGGTGCTTTTCCACCACCGCCCCACAGTGCTCATCCAGGGGCAAAACTGCCCAGCCAGGGCCCCTTCGCAGGCCCTCCTGCCATCAGGAGGCCACTCACTCCTGCGATCCTGACAGAAAAGGGCTGCAAAGGGCGACTCAGTCCTGGACAGCATTTGCCTACCAGCCGGAAAGGAGGCCCTCCCGCCATAAAGAGCTCGGGGTCTTCTGCTTCATCcacatcctcctcttcctcctcttctacCCCAAGGAGTGGACCATCTCCCAACAGCTCCATTCTCCAGCTCAGATCTCAGCCGCCCATCTCCACCTCTAAGAGGGGCATTTCTCCTGTGGCCAGAATGGGGCAGCCCAGTACCCACAGACCACCCTCTCCTGCCCAGCCCCCTGGCTGTCGTGGCCTTAAGCACAGTGCTAGTGTCCCCCACCTACATGTCCAGGCGGCCAACTTTCACACTCCGTATCCTGGCCCCAACCCTGGCAGCGGCTGCAGTTGTCGACCCCAACATGGTAGTGGTCCTTACTATCGGTCAAACTCATGGCAAGGTCAGCCCAGTGCTGTGCCCGCAAGTCCCGGTCCCTGCTGCCCCTCTGACAGCACTGGAGACTGCAGTTTCCCTCCTTTCACGCAAGGTGTCGGCCGCCATTCCCTGGGGCAGTGTGGCCCGGTCTACATGACCAGCAGTCCTGTAGACCAGCCAAACCACGGGACCTGCCCCCCTGTACAGGAACCCAGTGTTGTGGCATTGCCCGCAGGACAGAAGACCAGTCCCTGTAAAGGGCACTGCTGCCTGGCCCAGTCCAGCTACAGGGCTGTGCCCACTTCCTGCCCTCCTCTGGACAATGCCGTGGGGCTGTTGCCAGCTGATGCTTACAGGATTCTGGTGGAGCAGGATCGGCAGCTGAAACTAATGCATGctcagATTCAGAAGCTGCTGGAGGCCCAGAGCAATCACCAGTGCTCCTCTAAAGGgccctgcacacacactccTCCACAGCAATCCGAGACGCAGGTggaggtggtggccacagagaCTCAGATGGGCCCTGGTGTGCAGTTGAGGAAGAGTGTCAGCATTGCAGTGAGCACAGGTGCTAGCTTGTTCTGGAGCCCATCTTCAGAGCAGGAGGAAGCCCAGGTGACTGAATGTCAGACCCCCTCTGTGTCCGCTGTCTCCACCTCCACAGAAGAGGACAGTGTTGCCTCCTCCCTCAGGCCTGTGGTCGCCCCCAGCTACTCTGAGAGCACGGCACACAAAGACACCTTGTCCTCAGACACGCACAGTTCACCTCCAAGAGCCCGGCCTCAGACATTATTTCAAAGCCCCGTGCTTGAGGAGGGCGGTGCTAGTCAACACCATCTGGAAATAACTGAGCAGGACAGTTGCCTGCAGATCAATAGTGTGCAAGATGAACAGAAGTTTTATCAAGATTTATTGGGCCAGGTGAACAGCCGTCTGGAAGCCTCTGTCCCCGAAGCTGAGCCGGAGCGAGAGAGACAGGCTGCCCTTCCAGACTCACTGCCCCCGAAGTCCCCCCCTGCATCTCGTGACACCAACCGAAGGAAGCCTTCGGGCAGCAAGCAACTTCCATGGCAGGATGACGTCCTCCGGGCCACTCTCAGACAGCTGCAGCAGCTGGGGGTCACAGTGGACCTCGGCTCCCTCGCAGGCAAGGCCACCAAGACCACGGTGGAGAGCGCCAGcaCACTGGCCTGCATAAACCCAGAGGCGGTCATCCCAAGACTCAGTTACATGTCCTTCAGCAATGTGGGAGCCAGTGGCCTCTGCCCCAGTGGCCCAGACTTGAGCTTGGAGGCCAATGCCATTGCCCTGAAGTACCTGAGCGACTCCCAGTTGACTCAGCTGTCAGTGAGGAGAGGAGACGGTCCGCTGCCTGCTGCCCTCCTGCAGCCCAGCCACGCTGAGAGGAGCATGGTGGGACTCAGTGTCATGTCGCCCAACAACATGTCAATCGCCACCAGGAAATACATGAAGAGGTATGGACTCATCGAGGCAGGGGACAGtagtgaagaggaggaggacaagGTGGAGGAGGAAGGGAGGCAGTGGGATAGAAAACCCATGGTAGAGGACAATGAGTTTATCTTGCCCGTACTGGGAAGGCTGAGCTTCAGGGCTGAGAACCTGGAGAGCACAGCTGATGCCCAGATCAGACTTACTGCCTCAGGACCGACTGGGGAGGGAAGTGGGGGTCAGGTTCTTAAGAACATCACCAACGAGGTACATCCCCCCCAGACTCTGAACCAGGACTCCCAGAGCCAGCTGCTCAGGGAACTCCGACCCAAAATGAAGCTCTTGGCTGATCAGGCTTCCCAGAACCGCGAGAAGGAGAATGGCATTCAGCTCTTTCCCGAGAAACTGCACCCGGCTTTGTCCGAAATGTTGAGGCCCAGCACCCAAGAATCTGTGGGGAATTTCTTGGATGTGAGTCGGTTACGCCAGCTCcccaaactgttttaaaaaggaCAAAGACATCTCTCTCCCATAGGAACTGAGTGTGGCATCTGTGTGCAATGACAATAACAAAGTTTTCTTATCTTGGGTTAACTCCAAATATTTTTATAACTTTCTTTTGCTTTAAGGTTCCGAAGTATTGCACCTGATTTTATTTGTGACTGCGCAGAGAACATCAATGCAGTTTTTATTCAGGATACAGTGCACAAGacataaaaacttaaaatctCTGATCTACAGGGCTTCATTAATTCAGTACCTCATTTTATAGGTCTGTGTAAGATCTCCCTGGGTGTTTACTATGGACAGTGATTAGTTagacaacataaatatatttgtgttgtctAAGGCCACAAGAGTAGTTGGAACCTGTTATGGACTTgcatcatattttttaatacagttcTAGATTTAAAAAACTTATAGCCCAGATAAACAGGCTCCGATCACATTTTcaccaaaaacaaatctactCACAGCTGTATTCTGTGTAGTCCCTATTTGTATCACCTGGTTACTTCATACTAAGGCTATTTTATGCTTTGCAGGCTGCTGGACTCTCTATGACACTTAATAGAATAAGAGAGAGCTTTAccctgtgatatatatatttttttaagaatgtagaGAAATCAGACAATCAAAACATGATTCGTCAGAGGAAAGCCAATGTTTTCAGTGAAGGTTATATGGTCACAATTGTAGTCTTCCAACACTTTTAATACCCACTGTGTGCCTTAATGTCTAGGGTGTGGTGTGCATTTCGATTGTTTGTGTGCTATCTGTGTCAATTTTCCACTGTGCTGCAGTAGGTGAAGCAGTCAGGTAGTCGCATGTTTTAGTAGTCATTCAGTTATCCTAGCTGTGATCCTAACACCCTGATCTGACAGGAAGTATTTCCACTGAGATTAATTCACATGTGCacagtttaaatattatttaaaatatggtttTAACCCATGACCTCAAACATTCCTTGCACAACCCCCAAGGCATTGTATGCAAAGTGGTTCTCTTGTTTCAGATATGTTGTAATTTAACATGACTCATCAGGCAAGCCCAGTAAACGATCTTGACAACGGTAACTAATCTACAGAAACAATCCTCTTCTGCTTCATCTCTCTGTTCATTCCTCTGCATCTGGTTGTTTTGAACAAAATCagtgttattgatttaaattgtatatatttaatttataaaaagctgaatttatttaaatgacaatgaATGTGTGCAAAGATTAACCTGGATTGGTTTTGGGGGTTTGTCACAGATTtattggacatttttattttttatatatatttgttttttttataataaagatcTTTGATTTTATCTGTACTTGACATGTTTCATATGAAAAATCTGATGGTATATACAATGGTAAATAATTGACTTTATAAAATAGGATTACATAACTGGAAAGTGTTTTTTACTTAAAGCAAACTGAAGTAGACTGATGGGTAAAACTCAAACTGGTTTATTGAgcttaacaataaataaagatggCACCTGTTCAGAACTTTAATTGAAACCACAAATCAAGTCCAGTACTATACTTTAGAGCTATTtcataaaatgcaattaagaaCACttgtaaaaatgctttaaataaataaagg

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0070050 neuron cellular homeostasis biological_process
GO:0051225 spindle assembly biological_process
GO:0010171 body morphogenesis biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K16724 STIL; SCL-interrupting locus protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004820 True 5384 mRNA 0.50 15 4133709 4150001

Neighbor

gene id symbol gene type direction distance location
AMCG00004812 dph5,LOC106613590 coding downstream 198704 3932126 ~ 3935005 (-)
AMCG00004811 NA coding downstream 218748 3908147 ~ 3914961 (-)
AMCG00004808 NA coding downstream 269630 3856496 ~ 3864079 (-)
AMCG00004801 NA coding downstream 458885 3660865 ~ 3674824 (-)
AMCG00004802 NA coding downstream 479704 3648760 ~ 3654005 (-)
AMCG00004823 NA coding upstream 51007 4201008 ~ 4217993 (-)
AMCG00004824 NA coding upstream 174962 4324963 ~ 4359936 (-)
AMCG00004829 patj,inadl coding upstream 289539 4439540 ~ 4482780 (-)
AMCG00004828 NA coding upstream 426415 4576416 ~ 4591430 (-)
AMCG00004830 nfia coding upstream 527472 4677473 ~ 4686323 (-)
G143406 NA non-coding downstream 24853 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 35293 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 44716 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 161164 3972316 ~ 3972545 (-)
G143370 NA non-coding downstream 183872 3949415 ~ 3949837 (-)
G143430 NA non-coding upstream 37957 4187958 ~ 4191281 (-)
G143528 NA non-coding upstream 641689 4791690 ~ 4858146 (-)
G143539 NA non-coding upstream 835387 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 866846 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 1177714 5327715 ~ 5402341 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 17295 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 916480 3120229 ~ 3217229 (-)
G143145 NA other downstream 1423705 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3487098 644004 ~ 646611 (-)
G142773 NA other downstream 4003006 127778 ~ 130703 (-)
G143659 NA other upstream 1586808 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4203988 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4686359 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4722884 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7985377 12135378 ~ 12156378 (-)

Expression


Co-expression Network